Prap011813.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- -
- Assembly
- GCA_905147795.1
- Location
- LR990600.1:1667497-1671864[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0024 0.19 12.5 1.1 3 20 143 160 142 162 0.94 2 9 0.00017 0.013 16.1 0.1 1 23 195 217 195 217 0.97 3 9 0.047 3.7 8.4 3.2 1 23 222 245 222 245 0.98 4 9 0.00044 0.034 14.8 1.0 1 23 251 273 251 273 0.98 5 9 0.0028 0.22 12.2 0.9 1 23 279 302 279 302 0.95 6 9 0.014 1.1 10.1 0.4 1 23 311 333 311 333 0.96 7 9 0.00066 0.051 14.2 0.4 1 23 339 361 339 361 0.94 8 9 5.2e-07 4e-05 24.0 1.1 1 23 367 389 367 389 0.98 9 9 7.8e-06 0.0006 20.3 2.1 1 23 397 420 397 420 0.97
Sequence Information
- Coding Sequence
- ATGATGAATGAAATCTGCAGATTTTGTTTGAATAAAGAATGCAGCCAAAGTATGAGTGAATTAACAAAAAATAGTCGATTGACCCAAATTTTATATAAATATTTTTTATTAGAGGTTTCGCTAAACAGTAATTTGCCAAGACAAGTATGCACTGCTTGTACCATTAAAATTAATGACTTTGCATCATTTAGAGAAAAAATTATAGAGAATGAAAGGGTTTTACTTATGGAAGTATCAAGATTTAAAAAACAGCAAAGTAATTTAAATGAAACCTGTGATATAATAAGTGAAAATGAAAATTTGCCATCTGATACTAATGAATATGCAGCAGAAACCTCCAACAATATTATCAAAGCAGAAAAAACAAATGATACCATAGTAAAAATAGAATCAAATGATAAAATTAAAGATTTTCAACCTAATCTATGCTTAATGTGTTTTAAATCTTTTTCAACAAGAAATAAGCTATTTAAACATTATTTAGAAAAGAAACCAGATATTAAATTGGAAATAGAAAGTGGATTTATTGATGCACAATTCAAAAGCAATCAAGAGCAAAGGAGTTCTGAACATACTGTGTCATTTGTATGTAAAATATGTGGTAAATTGTTCAGCGATGCATATGGCATTTTGAATCATGGCAAATCACATAGTACTAATAAATTCTCTTGCTCATTCAAATGTGGCTACAGTAGTGGGTATAGTCATGTACTTAAAAATCATGAGAAAACACACACAAAAGAATATAAGTATACATGTGTGGACTGTGGAAAAGGCTTTCATGTGAAAACATGGTATGATCAACATCAAAATATACATAAAGGCATTAAGGATTATGTATGCAATATCTGCGGAGCTAGCTTTCACATGGATCGATATTTAACATCTCACAAAATATCTCTTCATCCAGAAGTGTGTACAAAGAAGCGTTATATATGTATGTATTGTTCTGTGGAATTTGGATCAAAGGGAAAATTTAATTTACATTTACAGGATCATGGTATTAAAAATGAATTCCTATGCGATCAATGTGGTAAAGTTATGAAAGATAAGAAGGGGTTGACTGCCCATAGGCTTCAGCATTCTACACATAGACCTTTTGTTTGTGGGAAATGTGATAAATCATTTGCAAAGAAATATAATTGGAAAATTCACTTACGTAGTCATAGAAATGATTTAAGTGATAAGTTTGAATGCGACATTTGCATGAAGACATTTACACAACGAAGTGCTCTAAATAGACACAAAAAAAGCAAACATGACAAACAGCAGATACCAGAAGCACCAAAGACTGAAGTCTGA
- Protein Sequence
- MMNEICRFCLNKECSQSMSELTKNSRLTQILYKYFLLEVSLNSNLPRQVCTACTIKINDFASFREKIIENERVLLMEVSRFKKQQSNLNETCDIISENENLPSDTNEYAAETSNNIIKAEKTNDTIVKIESNDKIKDFQPNLCLMCFKSFSTRNKLFKHYLEKKPDIKLEIESGFIDAQFKSNQEQRSSEHTVSFVCKICGKLFSDAYGILNHGKSHSTNKFSCSFKCGYSSGYSHVLKNHEKTHTKEYKYTCVDCGKGFHVKTWYDQHQNIHKGIKDYVCNICGASFHMDRYLTSHKISLHPEVCTKKRYICMYCSVEFGSKGKFNLHLQDHGIKNEFLCDQCGKVMKDKKGLTAHRLQHSTHRPFVCGKCDKSFAKKYNWKIHLRSHRNDLSDKFECDICMKTFTQRSALNRHKKSKHDKQQIPEAPKTEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205995; iTF_01204331; iTF_01202713; iTF_01203519; iTF_01205184;
- 90% Identity
- iTF_01204331;
- 80% Identity
- -