Prap015281.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- -
- Assembly
- GCA_905147795.1
- Location
- LR990587.1:4066859-4072997[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0007 0.054 14.1 0.4 1 23 243 265 243 265 0.97 2 11 0.0084 0.65 10.7 0.7 2 23 271 292 270 292 0.97 3 11 3.2e-05 0.0025 18.3 2.9 1 23 323 346 323 346 0.97 4 11 0.0094 0.73 10.6 0.1 2 23 351 373 350 373 0.91 5 11 0.0065 0.5 11.1 0.1 3 20 391 408 390 410 0.95 6 11 0.00012 0.0089 16.6 0.1 3 21 424 442 422 443 0.95 7 11 0.082 6.4 7.6 0.2 3 23 471 492 469 492 0.92 8 11 0.0047 0.37 11.5 0.1 3 23 505 524 503 524 0.96 9 11 5.3e-06 0.00041 20.8 1.8 2 23 537 558 536 558 0.98 10 11 0.00045 0.035 14.7 0.3 1 23 564 586 564 586 0.96 11 11 4.4e-05 0.0034 17.9 4.7 1 23 592 615 592 616 0.97
Sequence Information
- Coding Sequence
- ATGGAAAACGTAAAAGCCTGTAGGATTTGTTTAAAAATGGATACAAAATTTTCTGTTTTGCATCCGAAAAGTTTGGGATTGTTTTATGAATTACTGACAGGAACGACTGTACAAAAAGGTTTAATAAAATATGCTTGTTTTGAATGTGCTGCTCTTTTAAAAAAGTATTTTTGTTTTCGGCAAAAGAGTCTTCGCAGTCAATTTGTTTTGGAAAATATATTAGAGCACTGTGGAAAGATAACATCATCACATATAAATCAAATTGATAGGCAAAGCTTACTTTTAAATTCAAATCTAAGCAGAAATGATATTGAAATAAAAGACAGTGAATTATTAGAAGATATACCTTGCACAGAAGAAAAATTTAGTGTAGAGAATAATGATGATATAGACTTTCATTGGACATGTTCAAGTGACGAAGAACCTAAAATTAAAAGTGAGGAAAATGTAGTTATTGAAGTTCCAGTTAAAAAGGAAGTTGCAGGCAAGGGAAAAAAACGCAAGCCGAAACAACAAAAAACCCAGAGATGGATTAGAAAGAAAAAGAATGGGCGGAAGCAAAATGGTGTTAAGAAAGACCATAAAAAATCTGTTCCTGCCACATTTAGTAAGACTGTTGCAGATGAAGAGTTATATAAGCATGTTGCCATTGTAAATTTAACAGTGGATGAGCAATATGAAGAGGTGCGTAGACGCCAGGAGTCCAGCAATTATTTGAACTCATTCTACAAATGCGAAATCTGTTTCAAAGGCTTTATTGACGCACGCGCATGGCAGAATCACAATAAACAACATAATGAGGGTGAAGTCCAGTGCGACGTTTGCAAGTTACGATTCCGGAGTAAGGTGATCCTCAGCAGACATGTGAAGTACCACAGTACCAAGTATCACTGTTTGCAGTGTCCATATATCTCTCAGGGCATTTCTCAAGCAAAACTCCACTTGTTATGGCACAGAGGCGTAACATACGATTGCGATCATTGTGGCGAGAAGTTTAGACAACGCATGTCGTACATCACACACCTGCGAATGAAGCATCCGTCAGACTGGGTGTGCGGTGTTTGCGGAAACACCTTCGTCTCTCAAATGGGCTTGTTGCAGCACAAGAGTCTGCGACACACCCAAGTAAACGAAAAGACTGAAATAGAAGATAACCCCGAGGCGCCATTTTGCGAGTTATGTGACGTGAAGTTTGCGTCTCCAGAAGCATTTAAGCGACACTTGGTCCAGGCACGGAAACACGTGGCCACGGCCGAGAACAAATACGGGTGTCGAGAATGCGGGGAATCCTTCAAGACGGCGAAGGAGCTTCGGGATCACACCCGGGCGAGACCGGAATGTCTGCGAAAGCCGAGTTATTCCACTTCACCCGCTAAGAACAATGGCGATCCGCGCTCATGGCCCATGAACTGTCCACATTGTGGCAAGGAGATAGCGAATGCTTACATCTACTCGTGGCACTTCCGCACAGCACATCCCGAGAAAGATTATTACGCGGGATGTGATTCTATATGCGATGTTTGCGGCAAGGGATTTCCGAAACGTCTTCTAAGCGCTCATATCGCTAAACACTCAGTCGGCGGACCGAACGAGCTAAACGGAGGAGGCAAGTGTGAGACGTGTGGCAAAGTGTGTGTGAGCCGCAGCTCTTTATACGCACACAGGCGCACTCACTCGGAAGCTCGTCCGCACGTGTGTACGGTGTGTGGAATGGGATTCAAAGCTAAAAGTGTGCTACAGAGACATGGATTGGTACATACGGGCGAGAAGCCGTACACTTGCGAGTTGTGTGGCAAATCTTTTAGCCAATCCAACACCTGCCAACAACACATACGGACAGTGCATCACAAATTACCGCCATTGTACGTCAGCCGATCTAAACGCGAGCGCATGATGAGGCGTCATGCTCTTGCGCAGTAA
- Protein Sequence
- MENVKACRICLKMDTKFSVLHPKSLGLFYELLTGTTVQKGLIKYACFECAALLKKYFCFRQKSLRSQFVLENILEHCGKITSSHINQIDRQSLLLNSNLSRNDIEIKDSELLEDIPCTEEKFSVENNDDIDFHWTCSSDEEPKIKSEENVVIEVPVKKEVAGKGKKRKPKQQKTQRWIRKKKNGRKQNGVKKDHKKSVPATFSKTVADEELYKHVAIVNLTVDEQYEEVRRRQESSNYLNSFYKCEICFKGFIDARAWQNHNKQHNEGEVQCDVCKLRFRSKVILSRHVKYHSTKYHCLQCPYISQGISQAKLHLLWHRGVTYDCDHCGEKFRQRMSYITHLRMKHPSDWVCGVCGNTFVSQMGLLQHKSLRHTQVNEKTEIEDNPEAPFCELCDVKFASPEAFKRHLVQARKHVATAENKYGCRECGESFKTAKELRDHTRARPECLRKPSYSTSPAKNNGDPRSWPMNCPHCGKEIANAYIYSWHFRTAHPEKDYYAGCDSICDVCGKGFPKRLLSAHIAKHSVGGPNELNGGGKCETCGKVCVSRSSLYAHRRTHSEARPHVCTVCGMGFKAKSVLQRHGLVHTGEKPYTCELCGKSFSQSNTCQQHIRTVHHKLPPLYVSRSKRERMMRRHALAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00879051; iTF_01204286; iTF_01202675; iTF_01203464; iTF_01205933; iTF_01205134;
- 90% Identity
- iTF_01204286;
- 80% Identity
- -