Basic Information

Insect: Pieris rapae
Gene Symbol: -
Assembly: GCA_905147795.1
Location: LR990582.1:5842976-5850311[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0033 0.26 12.0 0.6 2 23 196 218 195 218 0.95

2 11 0.96 75 4.3 0.1 5 23 227 245 226 245 0.93

3 11 0.0044 0.34 11.6 2.5 1 19 270 288 270 293 0.91

4 11 0.0025 0.19 12.4 1.4 2 23 327 348 326 348 0.96

5 11 1.5e-05 0.0012 19.4 0.7 1 23 356 378 356 378 0.98

6 11 8.1e-05 0.0062 17.1 0.4 1 23 387 410 387 410 0.97

7 11 0.00013 0.01 16.5 0.3 1 23 416 438 416 438 0.97

8 11 6.3e-07 4.9e-05 23.7 3.5 1 23 444 466 444 466 0.99

9 11 0.0004 0.031 14.9 0.7 1 23 471 493 471 493 0.98

10 11 2.7e-06 0.00021 21.8 2.5 1 23 499 521 499 521 0.97

11 11 6.8e-05 0.0052 17.3 0.3 2 23 528 550 527 550 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0033	0.26	12.0	0.6	2	23	196	218	195	218	0.95
2	11	0.96	75	4.3	0.1	5	23	227	245	226	245	0.93
3	11	0.0044	0.34	11.6	2.5	1	19	270	288	270	293	0.91
4	11	0.0025	0.19	12.4	1.4	2	23	327	348	326	348	0.96
5	11	1.5e-05	0.0012	19.4	0.7	1	23	356	378	356	378	0.98
6	11	8.1e-05	0.0062	17.1	0.4	1	23	387	410	387	410	0.97
7	11	0.00013	0.01	16.5	0.3	1	23	416	438	416	438	0.97
8	11	6.3e-07	4.9e-05	23.7	3.5	1	23	444	466	444	466	0.99
9	11	0.0004	0.031	14.9	0.7	1	23	471	493	471	493	0.98
10	11	2.7e-06	0.00021	21.8	2.5	1	23	499	521	499	521	0.97
11	11	6.8e-05	0.0052	17.3	0.3	2	23	528	550	527	550	0.95

Sequence Information

Coding Sequence: ATGGCTATAGATGTAAAAAAAATATGTCGCCTCTGTGCGAATAAGGATCATGTTTTAAAAGATTTAAGCGAAGAGAGTAATAAAAATATACTGAAAATTATACAAGAATTTATACAAATAACTATATCTGAAGATGACACACTTCCTACAAAAATTTGCCTAAATTGTGAAGAAAAAATGATATCATTTCAATTATTTGTTTTGGAATGTTATAAAGTTCAAGAAAATTTACAAAATATGTGTGCAAGGGCAGATGAAAAGCTTGAACTTAAGCTAGATGATGATTTAAATTATAGAATAACTGAAATTAAATCTGAGGTTAAAGTTGAAATGGATGAAATAGTAGCCACTCTTAATAATGAAGTAACCTACTCTGATGTTGATGATGACAATATTGACTATGATAATGACAACAATGAATGTGATAGTGATAGTAGTGATGGTGTTACCCTAGCATCTTTAAAGGAAACCAAGGTTAAGCAAGCCTCAGGCATCAAACCAAGAGAAATGACTGATAAAGATAGGGAAGAACTAGAAAAACTTCTTAAGGATCCAAGAGCTAAACTAAAGAATTTTGTTAAAATGTCTTGTGCAGAGTGTCCGAAACGTGTGCACTCATGGGAATCATTGCGCAGTCACTATTACACTGTCCACCAGAAAAAAGTGTATACATTTTGCATATGTGGCTTTGTTTTGACATCAAAGAGTGCCATCTACAGGCATGTAGCTGAACATAAATCTCGACCACGACGAGGCTCAAGGAAATCCGACAATCGGAATTCAATTAAAGTCACAGATCTAATTAGGTTTAATTGCGAAGAATGTAATCTAGACTTTTCTAGTTGGTATAAGTTAAATACACATTGTATGTGGAAGCATAAAGCGACACCTATAGTGCATTGTAGTTGTGGCATTTCACTTAATTCAAGAACAGTTATGTATAAACACATTCAGGACCACAAAAGTCCAGATGCATTACACTGTGACCAATGTCCAAAAACAGCGAAAACAATTGAGGAACTTCAAAGACATAAGTTAAGGCATATACCGAAGTCTGAAAGAACATTCCCGTGTTCATCGTGTGATAAAGTGTTTACGTCAAAAGATCTAGTCAAATCCCACGAAAGATCACATGTACCGATAGAGCAGAGGAAAATATACGAATGTGACGTTTGTAATGAGAAATTCACCACTCGTTCATCGGCAGTATCCCACAAGCGTATAGTCCATGAAAAGATAAAGAGCTATGTGTGCGACCAGTGTGGATATGCGTGTGGCACAAATGGCGAATTGAGGCAACACCGCGCCATACATAGTGACGATAAACCTTACACGTGTCGGAAGTGTTCTAAAGCCTTCAAAACGTACTCGAATCTAAAAACACATATGGACACACACGAAGAGACATCGTATGTATGCTTTGTATGCAGTCGCGTACTTAACAGTCGACGAACGCTAAGGAAACACCTCCTAGTCCACGATGAGAAGTGTTCGCATGTCTGCAACTATTGCAATAAGGCGTTCAAACGAAGACAGACTTTAAAGGTACATCTAGCAATGCATACGGGCGATAAGCCGCTGTCGTGCAAATGGTGCGACGAGCGGTTTGCGTACGCGTCTACGTTACGCTCTCATCGCTTGCGTGCACACCCCGACAAAATGACAGTTCAAATGAATGACTGCTATTCGGTACAACAAGTTTCACAGGAATATCACAAAACCGATGTGAATTCTTTAAATGTTCCGAAGAGCGATTTACAGTAA
Protein Sequence: MAIDVKKICRLCANKDHVLKDLSEESNKNILKIIQEFIQITISEDDTLPTKICLNCEEKMISFQLFVLECYKVQENLQNMCARADEKLELKLDDDLNYRITEIKSEVKVEMDEIVATLNNEVTYSDVDDDNIDYDNDNNECDSDSSDGVTLASLKETKVKQASGIKPREMTDKDREELEKLLKDPRAKLKNFVKMSCAECPKRVHSWESLRSHYYTVHQKKVYTFCICGFVLTSKSAIYRHVAEHKSRPRRGSRKSDNRNSIKVTDLIRFNCEECNLDFSSWYKLNTHCMWKHKATPIVHCSCGISLNSRTVMYKHIQDHKSPDALHCDQCPKTAKTIEELQRHKLRHIPKSERTFPCSSCDKVFTSKDLVKSHERSHVPIEQRKIYECDVCNEKFTTRSSAVSHKRIVHEKIKSYVCDQCGYACGTNGELRQHRAIHSDDKPYTCRKCSKAFKTYSNLKTHMDTHEETSYVCFVCSRVLNSRRTLRKHLLVHDEKCSHVCNYCNKAFKRRQTLKVHLAMHTGDKPLSCKWCDERFAYASTLRSHRLRAHPDKMTVQMNDCYSVQQVSQEYHKTDVNSLNVPKSDLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01205926;
90% Identity: iTF_01202665;
80% Identity: -