Basic Information

Insect: Pieris rapae
Gene Symbol: -
Assembly: GCA_905147795.1
Location: LR990594.1:4259067-4261711[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.3 23 5.9 1.8 2 22 173 193 172 195 0.83

2 10 0.3 23 5.9 0.2 1 23 201 224 201 224 0.97

3 10 2.5e-06 0.0002 21.8 3.6 1 23 230 252 230 252 0.96

4 10 2e-07 1.6e-05 25.3 2.8 1 23 258 280 258 280 0.99

5 10 2.1e-06 0.00016 22.1 0.2 1 23 286 308 286 308 0.97

6 10 0.00018 0.014 16.0 0.4 1 23 314 336 314 336 0.97

7 10 7.7e-05 0.006 17.2 1.5 2 23 424 446 423 446 0.95

8 10 3.7e-05 0.0029 18.2 1.5 1 23 452 474 452 474 0.97

9 10 3.6e-05 0.0028 18.2 2.6 1 23 480 502 480 502 0.98

10 10 0.0027 0.21 12.3 0.0 3 23 511 531 509 531 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.3	23	5.9	1.8	2	22	173	193	172	195	0.83
2	10	0.3	23	5.9	0.2	1	23	201	224	201	224	0.97
3	10	2.5e-06	0.0002	21.8	3.6	1	23	230	252	230	252	0.96
4	10	2e-07	1.6e-05	25.3	2.8	1	23	258	280	258	280	0.99
5	10	2.1e-06	0.00016	22.1	0.2	1	23	286	308	286	308	0.97
6	10	0.00018	0.014	16.0	0.4	1	23	314	336	314	336	0.97
7	10	7.7e-05	0.006	17.2	1.5	2	23	424	446	423	446	0.95
8	10	3.7e-05	0.0029	18.2	1.5	1	23	452	474	452	474	0.97
9	10	3.6e-05	0.0028	18.2	2.6	1	23	480	502	480	502	0.98
10	10	0.0027	0.21	12.3	0.0	3	23	511	531	509	531	0.92

Sequence Information

Coding Sequence: ATGGATGATACTTATATCATAGCAAATTTTTATGCCTTGTGTCGACTATGTTTGGTTAAAAGCGGACTTACTGTGCCAATTTTTGGCAATACTCCTGACGATGAAGATAACAAATCACTCAACTTGAAAATCTCCGAATGCTTCGAACTTCAGTTGGATCCCAATGATGGCCTTCCTACAAGAATTTGCTATAAATGTTTATTTAAAGTTGACACATGCTCTAAGTTTAAATCATTGTGTTTAGAAAGTGAAGCCAGATTAAAACAAATTACTAATCAAATTAATGAACTCAATACCTCTAATTCATCTGAATTCAACTATGCAAATGCTGAGCATAAGCAACAGGCTGAAAATTATATTGTAGAAGATAGTGTTGTAATGGTAGTTGATCCAAGTCTTGACTATGATTCTTCTGAGGAATCAGAAAATGTTGAACAAGGAGAAACAGATATTGTAGAACAAGACAACATCCCAGAGGTAGAACATGTTCAAGAATCTTACTTTAAAAATGTTTCAATGTGTCAGTATTGTGATCAAGCATTTATATCCCAAGAAAAATGCAAAGATCATGAGGAAAATTTTCATGACCCTAACCGCCCATATAAGTGTATTGAGTGTAGTATAGTTTTTGCAGAAAGAAACTTGTTTGTTGGCCACACTAAAACTGTTCACGGAAGTGATAAGCCATATCACTGCCCAGAATGTGATAAATGCTTTGGCCGTCGCTCTGACTTGAGAAAACATTCAATTGTCCATACTGGTATTAGGCCATATCAATGTCAATACTGTTTAAAGAGTTTCTCTCGTAATACAAACTTGAGTAAACACTTGAGAATTCATGCAGGTCATAAACCTCATGTATGTCCAAAGTGTCCTCGAAGTTTTGTGGCCAAAGGAGATTTACAGCGACATATTTTAATTCACTCTGGAACAAAACCCTATGCCTGCCAGAACTGTCCATTAACTTTTGGTAGAAAAGATAAACTAGTAAAACATGAACTAAGACATGCAGGAGTAACATCATCTCATGGGATTGAAGAAAATAATGATATGGTGGTCAGTGTGAATCCATATAGCAATTTGATATCTTCTCCAAATGAACATTTGAATTCTAATGACTTTGAGCTTCCTAGAGTTCCTGATCATATTGCTGGAGATGGCAGTTTTTTGAATCATTTACAAAAGGCTCCATCAACATCTAACAAACAATTACAAATTTCACCTACTAAACAAAAGTCTCCTATAAGTAAAAATAAGCCTAAAAATATAAAATGTCATCAATGCCCTAAAAGGTTTTCATCTCTAGATGCCTACAAGACTCATGTATCTATCTCACACATTGGATCACGAGTTTTCCAATGTAAAGTTTGTTTTAAAAAATTTGCTAGAAAAAGAGAACTAGACCGGCATGCCTCTGTCCATTCAACAGGGAAACTTTTTAACTGCAGTCAGTGTGATAAACAGTTTACAAGAAAGGACAGACTTGACAGGCATGAGCAAACTCATGACTGCTTAGTGGTGAATATGCCCTGCATTGAGTGTGGTGCAACCTTTGAAAAGAAACCTGATTTAGTAGCACATATTAAATCTCATTTTACTGATAATTTTGATGATAAAGTAACAGAAGCTCGAATAAAAAAAGAAAATAAACAAGATTTTCCAATGGAAGAAAGTAATATGTATGATCTGGAGACATGA
Protein Sequence: MDDTYIIANFYALCRLCLVKSGLTVPIFGNTPDDEDNKSLNLKISECFELQLDPNDGLPTRICYKCLFKVDTCSKFKSLCLESEARLKQITNQINELNTSNSSEFNYANAEHKQQAENYIVEDSVVMVVDPSLDYDSSEESENVEQGETDIVEQDNIPEVEHVQESYFKNVSMCQYCDQAFISQEKCKDHEENFHDPNRPYKCIECSIVFAERNLFVGHTKTVHGSDKPYHCPECDKCFGRRSDLRKHSIVHTGIRPYQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPKCPRSFVAKGDLQRHILIHSGTKPYACQNCPLTFGRKDKLVKHELRHAGVTSSHGIEENNDMVVSVNPYSNLISSPNEHLNSNDFELPRVPDHIAGDGSFLNHLQKAPSTSNKQLQISPTKQKSPISKNKPKNIKCHQCPKRFSSLDAYKTHVSISHIGSRVFQCKVCFKKFARKRELDRHASVHSTGKLFNCSQCDKQFTRKDRLDRHEQTHDCLVVNMPCIECGATFEKKPDLVAHIKSHFTDNFDDKVTEARIKKENKQDFPMEESNMYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00771261;
90% Identity: iTF_01204276;
80% Identity: -