Basic Information

Insect: Pieris rapae
Gene Symbol: -
Assembly: GCA_905147795.1
Location: LR990583.1:3072140-3081354[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00028 0.021 15.4 4.7 1 23 164 186 164 186 0.98

2 11 8e-07 6.2e-05 23.4 1.5 1 23 192 214 192 214 0.99

3 11 3.4e-05 0.0026 18.3 1.7 1 23 220 243 220 243 0.95

4 11 0.027 2.1 9.1 3.8 1 21 249 269 249 271 0.95

5 11 8.4e-05 0.0065 17.0 2.7 1 23 277 299 277 299 0.99

6 11 1.5e-05 0.0011 19.4 1.2 1 23 305 327 305 327 0.98

7 11 0.0013 0.099 13.3 0.5 1 23 335 358 335 358 0.97

8 11 0.005 0.39 11.4 4.6 2 23 365 386 364 386 0.96

9 11 3e-05 0.0023 18.5 1.5 1 23 392 414 392 414 0.99

10 11 2.4e-05 0.0019 18.7 4.7 1 23 420 443 420 443 0.96

11 11 1.6e-06 0.00012 22.5 3.3 1 23 457 479 457 479 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00028	0.021	15.4	4.7	1	23	164	186	164	186	0.98
2	11	8e-07	6.2e-05	23.4	1.5	1	23	192	214	192	214	0.99
3	11	3.4e-05	0.0026	18.3	1.7	1	23	220	243	220	243	0.95
4	11	0.027	2.1	9.1	3.8	1	21	249	269	249	271	0.95
5	11	8.4e-05	0.0065	17.0	2.7	1	23	277	299	277	299	0.99
6	11	1.5e-05	0.0011	19.4	1.2	1	23	305	327	305	327	0.98
7	11	0.0013	0.099	13.3	0.5	1	23	335	358	335	358	0.97
8	11	0.005	0.39	11.4	4.6	2	23	365	386	364	386	0.96
9	11	3e-05	0.0023	18.5	1.5	1	23	392	414	392	414	0.99
10	11	2.4e-05	0.0019	18.7	4.7	1	23	420	443	420	443	0.96
11	11	1.6e-06	0.00012	22.5	3.3	1	23	457	479	457	479	0.97

Sequence Information

Coding Sequence: ATGGCACCTCTTCGTGGAGGGAATTCTAGAAACAAAGCCAGCAGCAAGCAGGCTATGACGGTTTCTGAAAATCAAACAACTCAGGGACCCTCTACTCCAAGAGTCACCATGAAAGAAGATATTAAGGAGCCAGAACAAAGTGTAACTTATTTTGTGGATGAAGAAGGTAGATACTATTACCAGCCTGCTGTGGATAATGAAAATCTTACCATGACTATTGATAATACAAATGATTCTGATCAAAAACATATTATAGTCAACGAAGATTACCAAACAGTCACATTAGTGCCATCGGAGTCTGATATGGGTGAAGTCAGCTATGTGCTGGTGGTTCAGGATGACAAGCAAGTTATGAATATTAATATAAAGGAGGAGAATGATGGTGATGTTTATACATTTGAAGATGAAGAAGACATAGCAGAAAAAGCTGATGAGCCATCAGATTCATTGGCTAAGCCAAAACGCAAGCAAAAGACCTCGCGGCCTAATTATAATTGCACTTACTGTAATTATGTGAGTCACAGAAAGTATTTGCTCTTAAGGCATATGAAGTCACACTCAGTTGACCGACCATTTAAGTGTTCTGTTTGTGACCGGGCCTTTAAGACCCGGGTTTCGCTGAACAATCACACAAACACTCACAATGGTATCAAGCCTCATATTTGCAAATATTGCAGCACACCATTTACTACTTCAGGTGAGCTTGTAAGACATGTTCGCTATAAGCACACTCATGAGAAGCCACACCGTTGTACTCAGTGTGACTATGCCTCTGTGGAACTGTCTAAGCTGAGAAGACATATTCGCTGCCACACTGGAGAGAGACCATATCAGTGCCCGCATTGTACATATGCATCGCCGGATACGTTTAAATTAAAACGTCACTTGCGCACGCACACCGGCGAGAAGCCATACAAATGCGATTCTTGCAACATGTCTTTCACCCAATCCAACTCGCTGAAAGCTCACAAACTTATCCACAATGTGTCAGAGAAGCCAGTGTACGCTTGCGAGCTTTGCCCGGCGAAGTGTGGACGGAAAACTGATTTGCGTATTCACATTCAGAAGTTGCATACATCGGACAAGCCCCTTAAATGCAAGCGTTGTGGGAAAACCTTTCCGGACCGATACTCTTGCAAGGTTCATAATAAGACCCATGAAGGCGAGAAATGCTACAAATGTGAGCTTTGTCCCTACGCATCGACAACGCTTCGACACTTGAAGGCGCACATGCTAAAACATACTGACCAAAAACCGTTTGTCTGCGATCAATGTAACCAATGCTTTAGGCAGAAGCAGCTTCTTCGTCGTCACCAAAACTTGTACCACAACCCTGATTATTCGCCAAAACCACCCAAAGAGAAAACTCACGTTTGTCACGAGTGTAACCGCAGCTTTGCACACAAGGGAAACCTCATTCGTCACTTGGCTATACACGACCCAGATTCTAATCACCTTGAGCAGGCGTTAGCTCTAAGGATTGGCAGACAGAAGAAACTTAGGCCATTTCCGGAAAAATCAATACGGGAAGAGAATTCCAGTTCGCTTCAAGAAGAAGTTGTTAAAATAGAAGTGGCCAACAATGAAAATAAACAAGATGAAAATATGGAAATAACTGGTGAAGAAAATCAAGAGTACGTGGTCTTAGAGGTCATACAATTGGAAGATGGATCTGAGCAACAAGTGTGCCTAATCACACCGCATTACTCTGACATGGAGAGACGAGAAGAAAGTGATCCAGCTAATGCAGATGATAATTCAGAAGGAGCCCAAGATTTATTCTACAAAACACAACTAAGAAAGACAATCGAACAAAATTTGAAAGCAGAGAAAGACTTAGATACTTGCTTTGGATTTGATGAAGAAGAAGAAGAAGAAGAAGTGGAGACTGTACCTAAATTTGAGGAACAGCAAAATGAAGAAGGATTTAGACTCCATTATGAATTAAGCGATGAAGAAAATTTTACACTTCACTATGAGTCAAGTGATGCCTCTGAAAAGGATGGTGAGTAA
Protein Sequence: MAPLRGGNSRNKASSKQAMTVSENQTTQGPSTPRVTMKEDIKEPEQSVTYFVDEEGRYYYQPAVDNENLTMTIDNTNDSDQKHIIVNEDYQTVTLVPSESDMGEVSYVLVVQDDKQVMNINIKEENDGDVYTFEDEEDIAEKADEPSDSLAKPKRKQKTSRPNYNCTYCNYVSHRKYLLLRHMKSHSVDRPFKCSVCDRAFKTRVSLNNHTNTHNGIKPHICKYCSTPFTTSGELVRHVRYKHTHEKPHRCTQCDYASVELSKLRRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCDSCNMSFTQSNSLKAHKLIHNVSEKPVYACELCPAKCGRKTDLRIHIQKLHTSDKPLKCKRCGKTFPDRYSCKVHNKTHEGEKCYKCELCPYASTTLRHLKAHMLKHTDQKPFVCDQCNQCFRQKQLLRRHQNLYHNPDYSPKPPKEKTHVCHECNRSFAHKGNLIRHLAIHDPDSNHLEQALALRIGRQKKLRPFPEKSIREENSSSLQEEVVKIEVANNENKQDENMEITGEENQEYVVLEVIQLEDGSEQQVCLITPHYSDMERREESDPANADDNSEGAQDLFYKTQLRKTIEQNLKAEKDLDTCFGFDEEEEEEEVETVPKFEEQQNEEGFRLHYELSDEENFTLHYESSDASEKDGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01205919;
90% Identity: iTF_01204266;
80% Identity: -