Prap004454.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pieris rapae
Gene Symbol
-
Assembly
GCA_905147795.1
Location
LR990606.1:3782644-3793629[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.27 21 6.0 0.0 3 23 112 132 110 132 0.96
2 15 0.0026 0.2 12.3 2.1 1 23 219 241 219 241 0.99
3 15 3.5e-05 0.0027 18.2 1.1 1 23 247 270 247 270 0.97
4 15 0.15 11 6.8 2.7 1 23 275 298 275 298 0.93
5 15 6.8e-07 5.3e-05 23.6 0.3 2 23 455 476 454 476 0.98
6 15 0.00018 0.014 16.0 1.5 1 23 482 504 482 504 0.98
7 15 0.56 44 5.0 9.7 1 23 553 575 553 575 0.96
8 15 0.036 2.8 8.8 0.3 1 23 582 604 582 604 0.95
9 15 0.0034 0.26 12.0 2.7 1 23 610 632 610 632 0.98
10 15 7.9e-05 0.0061 17.1 2.0 1 23 638 660 638 660 0.97
11 15 0.00054 0.041 14.5 2.9 1 23 669 691 669 691 0.99
12 15 9.1e-05 0.007 16.9 0.6 2 23 737 758 737 758 0.97
13 15 0.0046 0.35 11.6 3.2 1 23 775 797 775 797 0.96
14 15 1.8e-06 0.00014 22.3 0.7 1 23 803 825 803 825 0.98
15 15 3.6e-05 0.0028 18.2 5.2 1 23 831 854 831 854 0.98

Sequence Information

Coding Sequence
ATGGTGGAACCAGCAGTTTCTGATGTGGACCCGTTGGGAGCCTTTTCTTACCTATCTCAATACCACTATGGTCAGTTTCCAAACACAATCAACCCAACATATCAATTTGCTGTTAAACCAGAAGAATTTTACACATTACCCCCAAGCAGTACTTCTGATAACACCAACTATGTAAATACAACTCCCACAGCTCACATACAAAGTGAGAAACAACCAGATCCAAGTGTAAACTTTGATATAAAACCATTTTTAAAAACCAATGGCAAAGTTAAAAAAGAGAAAAAGAGTTTTATTTCTCAAAAAATTACTCAAGAAGGATATCCATTCTATGGTTGTGCTGTTTGTAATATAAGTTTCCCAGCACTTAGAGAATTAGATGTACATGTTGCAACACACAAAGGCAGAACAACAAGTTATGATTTAAGAGTGAAGAATGCATTGAAAAAGAAGAGATTAAAAAAGGAGCAGAAAAAATTAAAGAAAATGAAAAAAGAGGCAGTGTCTGATATTGATATTAAACCTGAAGATGGTTATATTGGTAACGAGAAAGCAACAGAATTTGGTTTGAACAACAATGATGTGAAAAACAAAAGTAATCAGGAAGAACTAAAAACCCAAGAAAATGCAACAGAATCCACAAATTTAGAAAAGATTTACAAGTGTTTTGCCTGTCAGAAACAGTTTATATTAAGTTATTATTTGAAGTTACATGTTAGATCACATACAGATGAAAAGCCATACACCTGTGAACAATGTGGGCAATCCTTTATAACGGCTAGCAAGCTTGGACGACATAATAAAAGATTTCATTTATCTGTCCAATATCAGTGCAGAATTTGTTATAGAAAGTTCTACAGATTTGAAATCCTAACGCGACATTTTGATAAAATACATGCTGATGACAAATTAGAAGGTGAACCATATGACTTCAATGCAATATTACCATACTTAAAAGAATTGGAGGAACAACTACGGGAAAAGCAAGAAATGGAGAAAGCTAAGACGAAAGATGATTTATGGTCTAACGAATGGCCAAGTCCGACAATAGAAAACGAGAAAGAAGATGTTAAAGAGAGTAAACCAGAAGTAGAAGATAAGAATTTAGAAATAGAAGTTGTTAAAGTGCCTATGGATGATGTTGAAATTAAAGAAGAAATTGAGGATGTTGATTATAATTATGATAATGCGGTTAATGATAATGGAATTAATTATGATATAAATAATGATGTGAATGATAATGAGGCTAATGATAATGATAGAGACGACGCAAGTGTCAATAACGACGATTCAGACGAAGATTATTTCCCATCAAACACATGGTTGAAGCCTGAGGAGCCGTTAGAAGTAACGACTAACGGCGTCAAGTGTCCCGTGTGCGACAAAAGTCTTAGTACGGCGTCGTACATGCGAGTGCACATGCGCACTCACACGGGCGAGCGTCCGTTCAAGTGCTATATATGTGATATGGGATTTATAACGGCCAGCAAAATGCACAGACATGTTCTGACACATCCGGAATCGTTGAAAGATGAACTCAAATCGGAAAATGATGCGAAAAATGAAATGGATGATGAGGATAAGGAGAAAGTGAAAAAGGCTGTAAAAAAATTATCGAAGAAAGTCAACGACAAGTCGAAGAAATATCGGAAGAGGCCTCACGCCTGTGAATATTGTCACAAACGATTTTTGCATCTTCATACATTACAGATCCATAAAAAATCCCATGAAGGCGAAGAAATTAAATATAGATGCCACTACTGTCTTCTAGAAGTTGAGGATGAAGAGAATCTGAAGGTTCATGAAGGAAGCCATACAGGACCAAAGCCCTACCAATGTACTATATGTGATAAGTTGTATAAAAAGAGAGAGAGTATGCTTTATCACAGGAAAAATCACAAACCCGAACGAGAATTCATATGCGATATTTGTACGAAATCTTTTAACGCACAATGCAAACTGCAAAGGCATATAATAAGCCATAGTGTGGATAAATATATGTTGAAATATGAGTGTCCTGTCTGTGCGCATATGTTTAATACAAAGTATCATGTACAAATGCATTTGTCCACGCATCAAAGGGAGGGAGTGATACAAGAGGAAAATCGCAACGAAATCCTGGCTATGGTGTTACAAAACGCGCGTAGGATTCCCCGCAAGGGCGAGACCCACAACTTGACGGACGTCATACCGTCGGACGAGCGAAGCCGCGTGTGCAACATATGCGGCGAGGTGTTCCAGCACTTCTATTACCTAGAGGAGCACCTCAAATCCCACGGATCCAAGATCGCCATAGAGAACATCGACAAAGAGGAAGAGAAGAAATATATTTGTGAAGTTTGTAATAAAGGTTTTAAATTGCACTATTATTTGAAATTGCATAGCTTTACCCACACAAAGGAGAAACCGTTCATTTGCCAGCAGTGCGGGAAGGGCTTCATCACCAGGGGGAAACTGAAGAGGCATTTGGAGACTCATACGGGCTTAAAGAAATACCAATGTCATATTTGTTGTAAGTTTTTTACGAGGCCCAGTTATTTAAGGGTTCATGTGAGGACTATACATGGTGCTCAGCTGGTTAGATTGGGGCTTAGGACGTAA
Protein Sequence
MVEPAVSDVDPLGAFSYLSQYHYGQFPNTINPTYQFAVKPEEFYTLPPSSTSDNTNYVNTTPTAHIQSEKQPDPSVNFDIKPFLKTNGKVKKEKKSFISQKITQEGYPFYGCAVCNISFPALRELDVHVATHKGRTTSYDLRVKNALKKKRLKKEQKKLKKMKKEAVSDIDIKPEDGYIGNEKATEFGLNNNDVKNKSNQEELKTQENATESTNLEKIYKCFACQKQFILSYYLKLHVRSHTDEKPYTCEQCGQSFITASKLGRHNKRFHLSVQYQCRICYRKFYRFEILTRHFDKIHADDKLEGEPYDFNAILPYLKELEEQLREKQEMEKAKTKDDLWSNEWPSPTIENEKEDVKESKPEVEDKNLEIEVVKVPMDDVEIKEEIEDVDYNYDNAVNDNGINYDINNDVNDNEANDNDRDDASVNNDDSDEDYFPSNTWLKPEEPLEVTTNGVKCPVCDKSLSTASYMRVHMRTHTGERPFKCYICDMGFITASKMHRHVLTHPESLKDELKSENDAKNEMDDEDKEKVKKAVKKLSKKVNDKSKKYRKRPHACEYCHKRFLHLHTLQIHKKSHEGEEIKYRCHYCLLEVEDEENLKVHEGSHTGPKPYQCTICDKLYKKRESMLYHRKNHKPEREFICDICTKSFNAQCKLQRHIISHSVDKYMLKYECPVCAHMFNTKYHVQMHLSTHQREGVIQEENRNEILAMVLQNARRIPRKGETHNLTDVIPSDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIENIDKEEEKKYICEVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICCKFFTRPSYLRVHVRTIHGAQLVRLGLRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01205912;
90% Identity
iTF_01205912;
80% Identity
-