Basic Information

Insect: Pieris rapae
Gene Symbol: -
Assembly: GCA_905147795.1
Location: LR990606.1:2642460-2647257[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.014 1.1 10.1 2.4 1 23 40 62 40 62 0.94

2 25 0.24 18 6.2 0.2 2 23 88 110 87 110 0.95

3 25 0.00036 0.028 15.1 1.3 1 23 131 153 131 153 0.98

4 25 0.092 7.1 7.5 1.8 1 23 157 179 157 179 0.81

5 25 0.095 7.3 7.4 2.1 1 23 183 206 183 206 0.97

6 25 5.8 4.5e+02 1.8 1.5 2 23 213 235 212 235 0.90

7 25 0.0027 0.21 12.3 0.3 2 23 243 265 242 265 0.95

8 25 5.9e-05 0.0046 17.5 2.9 1 23 271 293 271 293 0.97

9 25 3.4e-06 0.00026 21.4 2.0 1 23 299 321 299 321 0.98

10 25 0.31 24 5.8 1.4 1 23 357 379 357 379 0.94

11 25 0.013 0.98 10.2 0.0 2 23 408 430 407 430 0.90

12 25 0.26 20 6.1 0.2 3 23 452 473 450 473 0.94

13 25 0.0032 0.25 12.1 3.9 1 23 478 501 478 501 0.96

14 25 0.24 18 6.2 0.2 1 23 506 529 506 529 0.92

15 25 0.092 7.1 7.5 0.7 2 23 532 554 531 554 0.97

16 25 0.92 71 4.3 1.5 2 21 561 580 560 581 0.90

17 25 0.0028 0.21 12.3 0.8 1 23 637 660 637 660 0.95

18 25 0.026 2 9.2 0.1 3 23 688 709 686 709 0.94

19 25 1.8e-05 0.0014 19.1 0.3 2 23 732 754 731 754 0.97

20 25 0.0003 0.023 15.3 0.9 3 20 761 778 760 782 0.93

21 25 0.098 7.6 7.4 0.5 1 23 787 810 787 810 0.96

22 25 0.00036 0.028 15.0 0.3 2 23 816 838 816 838 0.93

23 25 0.0012 0.095 13.4 2.9 1 23 842 865 842 865 0.93

24 25 0.00062 0.048 14.3 0.3 2 23 872 893 871 893 0.96

25 25 0.13 9.7 7.1 2.1 1 23 899 921 899 921 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.014	1.1	10.1	2.4	1	23	40	62	40	62	0.94
2	25	0.24	18	6.2	0.2	2	23	88	110	87	110	0.95
3	25	0.00036	0.028	15.1	1.3	1	23	131	153	131	153	0.98
4	25	0.092	7.1	7.5	1.8	1	23	157	179	157	179	0.81
5	25	0.095	7.3	7.4	2.1	1	23	183	206	183	206	0.97
6	25	5.8	4.5e+02	1.8	1.5	2	23	213	235	212	235	0.90
7	25	0.0027	0.21	12.3	0.3	2	23	243	265	242	265	0.95
8	25	5.9e-05	0.0046	17.5	2.9	1	23	271	293	271	293	0.97
9	25	3.4e-06	0.00026	21.4	2.0	1	23	299	321	299	321	0.98
10	25	0.31	24	5.8	1.4	1	23	357	379	357	379	0.94
11	25	0.013	0.98	10.2	0.0	2	23	408	430	407	430	0.90
12	25	0.26	20	6.1	0.2	3	23	452	473	450	473	0.94
13	25	0.0032	0.25	12.1	3.9	1	23	478	501	478	501	0.96
14	25	0.24	18	6.2	0.2	1	23	506	529	506	529	0.92
15	25	0.092	7.1	7.5	0.7	2	23	532	554	531	554	0.97
16	25	0.92	71	4.3	1.5	2	21	561	580	560	581	0.90
17	25	0.0028	0.21	12.3	0.8	1	23	637	660	637	660	0.95
18	25	0.026	2	9.2	0.1	3	23	688	709	686	709	0.94
19	25	1.8e-05	0.0014	19.1	0.3	2	23	732	754	731	754	0.97
20	25	0.0003	0.023	15.3	0.9	3	20	761	778	760	782	0.93
21	25	0.098	7.6	7.4	0.5	1	23	787	810	787	810	0.96
22	25	0.00036	0.028	15.0	0.3	2	23	816	838	816	838	0.93
23	25	0.0012	0.095	13.4	2.9	1	23	842	865	842	865	0.93
24	25	0.00062	0.048	14.3	0.3	2	23	872	893	871	893	0.96
25	25	0.13	9.7	7.1	2.1	1	23	899	921	899	921	0.97

Sequence Information

Coding Sequence: ATGGCGGAAGATATAAACTCATATTCGTCCACAAAACGAAATCGACTTATGAAAAAGAATGCGATAATCATATTAGAAACGTCCACCGTCATACCCTTCAAATGGCACAGACATAAATATCTTTGTTTCTTTTGCCATCGGCCTTTCAAAGATATCGCCACATTAAAAGAGCATACGAAAGATCATGAAAAATCTAGTATCAAATCGGCTGTTTCGTACCTAAAAAGAGACGAAAAAGTGAAAATTGATGTGCTAAACACCCGTTGTCGACTATGCGATCAGGAATTTGATGATCTCAAAGAAATAGTTGAGCACAGTAGGAGTGTACATAGTAAAGTCTTTAATGAATTTGGTTTCGGCGTTGTGCCATATAAGCTGGGAGAAGATGGCTTCAGATGCGCGGAATGCCAGGAATCGTTCGAATATTTTATTAAACTCAATCAACATATGAACAAACACTATGGGGATTATGTTTGCGAGCTCTGTGGGAAATCGTTTTTAAGTCAAGATCGGCTGAGGTGTCATTCGCTTAGCCATGGATCGGCCTTCCACTGCAGTCTATGTTCCGAAGCCTTCGGTTCTCTAACGCAGAGGAAAAACCACGAAAGAAAAGTCCACAATAGAGACAAGTCAATAAGATGCATCTACTGTTCTGAGACATTTCAAAATTATACGTCAAGAAAGATACATCATAGCATTGCGCACAACGTTGAAGGTCCGGATATAAAATGTCCAGTGTGTCAAAAGACATTTCAAATTTTGAGCAAAATGAGGGTACACTTGAAGGAGGTACACCTGAGGGAGAAGAACTTTGCGTGCACGGTGTGCGGGAAGAAATTCTTCTCGCGCACCCACGTGCAAAAGCATATAATCAAGCATACGGGCGAGAGGGTGCATGAATGCAGCATATGCAAGAAGGCATATGCGCGGAAGCAAACTTTGAAAGATCATATGCGGATACACAATAAACATAAATACAGCGGCCTCCCAACCTCGATGCGCATACGACGAAATCTAGTCACCCTATTCAATAAAACAACAATAATTCCATTTAAGTTTCGCGGAAAATACCTTTGCTTCTTTTGTAGCAAGTATGTTGAGGAATTCTCCGAACTCAGACGACATACGAAGGCACATGGTGAATGTTCCATACGAACACATTCCTTAAAAGCTATAAGAGGTGTTAGTAACGTGGAGATAAAGATAGATGTCTCTGAAATCAGTTGTGAGATTTGTAAAGAGGTTTTTCCCAGGATAAGTGAGGTTATCCAACATTTAGTGCTGAAGCATAGTATGGAGTATGATCAGGATATTGAGATGCCCTTTGAGGAGTATCGGCTCAAAGATCTTGCCTGTCTCAACTGTGAGGCGAAATTCACGTTCTTCGGCTATTTAGTCTCTCATGTGAACAGTAACCATCCCAAAAATAGCTTCACATGCGATACCTGCGAACAGAAATTCAATAAGAAGCGGGATTTGTTCTCGCACACGAAGAATTATCATCGGGAAGGTGGTTTTGTGTGCGATGCGTGCGATTTGACGTTCGCCTCGTTGAATATATTGAATAAACATAAGATTAATCGCCATATGTCGCGGTGTAATATATGTTTTTTGAAACTACCCTCGGCCGTGTTGAAACGGAAACACATGAAGACCGAGCACCCGGATGACGGTTCGCTGAAATGCAAATTGTGTTTCAAACAGTTTCACACGGACATCGGTTTGAAAATGCATTCCAGGAATTGTAGGAATGCCGAAGTTGTCTTTGATGACAATGATGGTGACATTATGGATTCCGATGTCAAGTATGACGCACCTAAACGTACTAGCGTAAAACAACTTCGGGAGAATATCTCTATAGTGATAACCATGTCCACGGCGATACCGTTCAACTTCTTCCAGAATAAATTCAATTGTTTCTTCTGTTCCAAAGACTTTCAGGACCCGGATTCCCTAAGGGAACACACGCTAATTACGCATCAGATATGCGACGTACGTAATAGTATACGCAAATGTCGCGAATCGGAATCCTCGGTCAAAATAGATATAGCCAATCTGGCTTGTAAGTTGTGCCTTGAGACGTTTAGCGATTTGGACGTGTTACTAAACCACTTGATATCGAAACACGAAGCCAATTATGATAAAACAATTAAAACCTGCCTCCAACCGTACCATTTGGTCAAGGATCAGATGAAGTGTCCCCTCTGTGATGAGGTTTTTAGATTCTTTGGAACACTGTTGAAGCACATGAACACGATACATACGGATAATAGAAATATTTGCGTTCACTGTGGACAGTCGTTTCGTAGGGAACAGAATCTTCGTGTGCATCTGTGGCGGCGGCATAGTGATGGAAAGTTCAATTGTAGTGTTTGTGGTCTGGATTGTGATATACCGTCGAGGCTGTTCATGCACATGGCCAGGCAGCATGGCGTGAAGGCGGCCAAGTGCCCCAAGTGCCCCGAGACGTTTGAGACGCAGTACTCGAGGCAGAAACATCTGATAGCGGCCCATGATTTGGGGCACAAATGCACGTATTGCGGCAAATTGTTTACGAGGGAGTCGTTTATGAGGGATCATGTTGGGCGGACGCATTTGAAGGAGAGAAATGTGGTGTGCACGATTTGTGACGCGAAGTTTTTTAATAATATCCTGTTGAGGCGACATCTGGTGAAGCACAGTGGCGTGAAGAACTTTCATTGCGATGTATGTGGGGATAGGTTTTATTGGAAGAAGAGTTTGAGTACGCATATGGCGAAGCATAAGAGAAATGATGTGTTGCACCATTAG
Protein Sequence: MAEDINSYSSTKRNRLMKKNAIIILETSTVIPFKWHRHKYLCFFCHRPFKDIATLKEHTKDHEKSSIKSAVSYLKRDEKVKIDVLNTRCRLCDQEFDDLKEIVEHSRSVHSKVFNEFGFGVVPYKLGEDGFRCAECQESFEYFIKLNQHMNKHYGDYVCELCGKSFLSQDRLRCHSLSHGSAFHCSLCSEAFGSLTQRKNHERKVHNRDKSIRCIYCSETFQNYTSRKIHHSIAHNVEGPDIKCPVCQKTFQILSKMRVHLKEVHLREKNFACTVCGKKFFSRTHVQKHIIKHTGERVHECSICKKAYARKQTLKDHMRIHNKHKYSGLPTSMRIRRNLVTLFNKTTIIPFKFRGKYLCFFCSKYVEEFSELRRHTKAHGECSIRTHSLKAIRGVSNVEIKIDVSEISCEICKEVFPRISEVIQHLVLKHSMEYDQDIEMPFEEYRLKDLACLNCEAKFTFFGYLVSHVNSNHPKNSFTCDTCEQKFNKKRDLFSHTKNYHREGGFVCDACDLTFASLNILNKHKINRHMSRCNICFLKLPSAVLKRKHMKTEHPDDGSLKCKLCFKQFHTDIGLKMHSRNCRNAEVVFDDNDGDIMDSDVKYDAPKRTSVKQLRENISIVITMSTAIPFNFFQNKFNCFFCSKDFQDPDSLREHTLITHQICDVRNSIRKCRESESSVKIDIANLACKLCLETFSDLDVLLNHLISKHEANYDKTIKTCLQPYHLVKDQMKCPLCDEVFRFFGTLLKHMNTIHTDNRNICVHCGQSFRREQNLRVHLWRRHSDGKFNCSVCGLDCDIPSRLFMHMARQHGVKAAKCPKCPETFETQYSRQKHLIAAHDLGHKCTYCGKLFTRESFMRDHVGRTHLKERNVVCTICDAKFFNNILLRRHLVKHSGVKNFHCDVCGDRFYWKKSLSTHMAKHKRNDVLHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01205107;
90% Identity: -
80% Identity: -