Prap004507.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- zfy1
- Assembly
- GCA_905147795.1
- Location
- LR990606.1:1288446-1295438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.32 25 5.8 1.1 1 23 28 50 28 50 0.97 2 27 0.0027 0.21 12.3 0.1 2 23 78 100 77 100 0.91 3 27 2.1e-05 0.0016 18.9 4.4 2 23 124 145 123 145 0.97 4 27 0.067 5.2 7.9 1.2 2 23 149 170 148 170 0.96 5 27 0.0036 0.28 11.9 3.3 1 23 175 198 175 198 0.96 6 27 2.5 2e+02 2.9 2.8 2 23 209 231 208 231 0.90 7 27 0.012 0.89 10.3 0.7 1 23 237 260 237 260 0.94 8 27 9.5e-06 0.00073 20.0 1.9 2 23 265 286 264 286 0.96 9 27 4e-05 0.0031 18.0 2.6 1 23 292 314 292 314 0.98 10 27 0.002 0.15 12.7 3.2 1 23 320 343 320 343 0.97 11 27 0.25 20 6.1 0.5 1 23 394 416 394 416 0.88 12 27 1.5 1.2e+02 3.6 0.8 2 23 445 467 444 467 0.95 13 27 0.0002 0.015 15.9 2.2 3 23 492 512 490 512 0.96 14 27 0.0011 0.082 13.6 0.1 1 23 515 537 515 537 0.97 15 27 0.00062 0.048 14.3 2.5 1 23 542 565 542 565 0.97 16 27 1.7 1.3e+02 3.5 3.9 2 23 575 597 575 597 0.95 17 27 0.00089 0.069 13.8 2.3 1 23 603 625 603 626 0.93 18 27 2.6e-07 2e-05 24.9 2.0 2 23 631 652 630 652 0.97 19 27 0.16 12 6.7 0.3 1 19 698 716 698 716 0.95 20 27 0.0067 0.52 11.1 0.0 2 23 744 766 743 766 0.91 21 27 7.6e-05 0.0059 17.2 2.3 2 23 790 811 789 811 0.96 22 27 0.05 3.8 8.3 0.9 2 23 815 836 814 836 0.96 23 27 0.023 1.8 9.4 0.3 1 23 841 864 841 864 0.95 24 27 0.64 50 4.8 4.1 1 23 871 894 871 894 0.96 25 27 0.018 1.4 9.7 4.4 1 23 900 923 900 923 0.97 26 27 5.8e-05 0.0045 17.5 1.3 1 23 927 949 927 949 0.98 27 27 7.5e-05 0.0058 17.2 2.5 1 23 955 977 955 977 0.95
Sequence Information
- Coding Sequence
- ATGACAGTGTATGAAAGACTGAACGCGGCAACATTCCTAGAAAACACAACAGCGAAACCGTTCTACTATTACCAGGCAAACTTTAAATGCTTCTTCTGCACTGAGATCTTCACTGAAGTCACCTCCGTTCTTCAGCATACAGACACCCATCCAATTACAGACAGGTCGAGTTTATTACGCAACTATCTAAGAAAGGGAAAACGCGTCATTAAAGTCGATATATCCAATTTAAAATGCCGCATTTGTGACGAGAAATTTTCGGACATTGACGAGATTCGGAAGCATCTAGCTGGCGTACATAAACGGGAATTTAATAGCGCCGGTACTGGTGTCATCGCGTATGACTTGCGGGTTAAAAATGGGCTTCTGTCATGCCACAAATGCAATAAAACATTTAACTCGTTCTTTCTACTGAACAGGCATATGAATGTTCACTTCAGTGTTGTGTGCGAGACGTGTGGCCTAGGCTTTATGTCGCACCATAGACTACTAAGCCACAGAATCGTTCACCAGAACGGTGTCCACAGATGCGATAATTGTGAAGAAGTTTTCGCTACCAAATTGAAGTTGAGATATCACATGTTTAAAAAGCACGAAATGAATACGAAACGTAGGAAGCCTCTCAAATGTCCGCATTGTTTGGAGAGGTTTGCTGAGCATTATCGGAAGATGACCCACTTGAAAGAGGTACACGGCATCACATTCACATTCGACTGCCAGTCCTGCAAAGCGGTGTTTCCGACGCGGCGAGCGTTGACGGAACACACGACCAAGCAACACACCCAAAGGATACAATGCAAAGTGTGTGGGAAGTGTTTTGGTACACAATCGTTATTGAAGATGCATTCAAGGGGGCATACTGGCGAGAGGAATTTCTCATGTGGCATCTGTCAGAAGTCATACATGCACGAACGGACGCTACGTCAGCACATGCGGGTGCATGGGCCGGTTTGGAAGTTCACGTGTAGCGAGTGTGGGCACGGATTCCATGATGGAAACGATTTTAATAAGCACATGAAGCAGTGGCACCCGCAGAGTGTTGTTAAAAACTTTGTGCCGGAATTCGAAGGACCAAAACCTAGTACAAGCGACGCTGACACACAATTAATAGAAAGATTAAACGCGGCAACAATCATAGAGAACACCACAGTAAAACCATTTATATACCTCCAAGCAAATTTTAAATGCTTCTACTGCAGTGAAGTTTTCCCGGAAGTGTCATCGGTGTTGCTACATTCAAGCTACCACACGCTTCCGGATCGGCCATCTTTGTTAAAAAACGACTATCTTAAACAGGGCAAACGCGTTATTAGGGTCGATATATCGGACTTGAAATGCCGTTTATGCGAGCAGAAGTTGAACGAATTGGAAGACGTAAGACACCATTTGGAAACCGAACACCAGAAACAGTTTAAAGCAGCTGGTGATGGGCTAATGGCGTACGATTTGACGGCTAATAACGGTCTTATCGCCTGTTACAAATGCAAGGAAACATTCACGTCCTTCCATCTTCTAAACCGACACATGAACGCGCATTCCAGCTTTGTCTGCGAAACGTGTGGCGTGGGATTTGTGTCGCAACGCAGATTAATCAACCACACAATCGTACATCAAAACGGCACCCACAAATGTAAACAATGCGACGAAGTGTTCCCAACCAAACTGAAACTTCGGTATCACGTAATAACCAAGCATAATAAGACAGACAAACGCATAAGAAGGAAGTGTCCGCACTGCTTGGAACGCTTCACCGAACACTACCGGAAAATGACGCATTTGAGGGAGGCGCACGGGATAACGTTTTCCTTCGACTGCCGGCTTTGTAACGAAGTTTTCCCCACGAGGAAAGCGCTGACGAAGCACACGACCCAGCATCATACGCAGAGAATCCAGTGCACAATTTGCGGCAAATGCTTCGGCACAAATACACTGCTGAAGCGGCATATGCGCGGACATATTGGCGAGAGGAATTTCGTTTGTAACGTCTCTGCTGAGAAGGCATCAAACGAAACAGAGATCCTAGAACGCCTAAACGCAGCCACCTTGATCGAACATACCACCATCAGACCGTTCCTCTACCAACCACCCAACTTTAAATGTGTCTACTGCTTCCAAACATTCCCAGATATCCCTTCACTACTCCAACACGACACCCATTCCATCCCCCGCAGACCTCACTTGATAAAAAACCATTTGAAACGTAATTTAAAAGCGGATATATCGGATCTAAAATGCAGAATTTGCGGCGAAGGATTCCCTGACCTGTCTGACATAAGACTGCATTTAGATGAAGTTCACAAAAAGTTGTTTTATAACGCTAATAATGGCGTTATTGCATATGATCTAACTTTAAAAGATGGACTATTAGAATGCTATAAATGTAACAAAACATTCAATTCATTTTTTCTTCTCAATAAACACATGAATGAGCATTCAAATGTAGTCTGTGAAACCTGTGGCCTCGGCTTCGTGTCAAAGCAAAGGCTCAAATGTCACATGACAGTTCACCAAAATGGCGTCTATAAATGTGGGAATTGCGACGCGGTGTTGCCAACGCAATTCGCTTTACGTTACCATTTTCTATCGAGGCATGCGGTGGAGAAGAAGCGATTTAAATGCGCTCTCTGCTTCGAGCGATTTTCGGAGCATTATACAAAAATGACGCATTTGAGAGAAAAACATGGGATTTCATTTAATTTTACCTGTTCGATATGTAAGGCGAATTTTCATACGCGCAAGGCGTTTTGGAAACACAAAAATAAGATGCACACGCAGGCATTTAAGTGTGAGATCTGTGGGAAGTGTTTTGGGGAGAATTGGGTGTTGAAAATGCATTTGAAATCTCATACCGGGGAGAAGCCGTTCGTTTGTGACATCTGTCAGAAATCGTATAAACAGAAGAAGACCTTGTTGAAACACAAAACTTTGCACGAAACAACGTAG
- Protein Sequence
- MTVYERLNAATFLENTTAKPFYYYQANFKCFFCTEIFTEVTSVLQHTDTHPITDRSSLLRNYLRKGKRVIKVDISNLKCRICDEKFSDIDEIRKHLAGVHKREFNSAGTGVIAYDLRVKNGLLSCHKCNKTFNSFFLLNRHMNVHFSVVCETCGLGFMSHHRLLSHRIVHQNGVHRCDNCEEVFATKLKLRYHMFKKHEMNTKRRKPLKCPHCLERFAEHYRKMTHLKEVHGITFTFDCQSCKAVFPTRRALTEHTTKQHTQRIQCKVCGKCFGTQSLLKMHSRGHTGERNFSCGICQKSYMHERTLRQHMRVHGPVWKFTCSECGHGFHDGNDFNKHMKQWHPQSVVKNFVPEFEGPKPSTSDADTQLIERLNAATIIENTTVKPFIYLQANFKCFYCSEVFPEVSSVLLHSSYHTLPDRPSLLKNDYLKQGKRVIRVDISDLKCRLCEQKLNELEDVRHHLETEHQKQFKAAGDGLMAYDLTANNGLIACYKCKETFTSFHLLNRHMNAHSSFVCETCGVGFVSQRRLINHTIVHQNGTHKCKQCDEVFPTKLKLRYHVITKHNKTDKRIRRKCPHCLERFTEHYRKMTHLREAHGITFSFDCRLCNEVFPTRKALTKHTTQHHTQRIQCTICGKCFGTNTLLKRHMRGHIGERNFVCNVSAEKASNETEILERLNAATLIEHTTIRPFLYQPPNFKCVYCFQTFPDIPSLLQHDTHSIPRRPHLIKNHLKRNLKADISDLKCRICGEGFPDLSDIRLHLDEVHKKLFYNANNGVIAYDLTLKDGLLECYKCNKTFNSFFLLNKHMNEHSNVVCETCGLGFVSKQRLKCHMTVHQNGVYKCGNCDAVLPTQFALRYHFLSRHAVEKKRFKCALCFERFSEHYTKMTHLREKHGISFNFTCSICKANFHTRKAFWKHKNKMHTQAFKCEICGKCFGENWVLKMHLKSHTGEKPFVCDICQKSYKQKKTLLKHKTLHETT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -