Prap012148.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pieris rapae
Gene Symbol
-
Assembly
GCA_905147795.1
Location
LR990601.1:4617705-4635614[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 5.9e-05 0.0045 17.5 0.1 3 23 129 149 128 149 0.97
2 14 5.3e-07 4.1e-05 24.0 1.2 1 23 155 177 155 177 0.99
3 14 3.3e-06 0.00026 21.5 2.7 1 23 183 205 183 205 0.99
4 14 2.1e-07 1.6e-05 25.2 1.5 1 23 220 242 220 242 0.99
5 14 9.4e-05 0.0072 16.9 2.8 1 23 248 270 248 270 0.98
6 14 0.00015 0.012 16.2 0.0 1 23 277 299 277 299 0.97
7 14 3.2e-06 0.00025 21.5 2.0 1 23 305 327 305 327 0.99
8 14 0.021 1.7 9.5 1.8 1 23 334 356 334 356 0.98
9 14 3.6e-07 2.8e-05 24.5 2.3 1 23 362 384 362 384 0.99
10 14 0.025 1.9 9.3 1.8 1 23 391 413 391 413 0.98
11 14 1.5e-06 0.00011 22.6 1.5 1 23 419 441 419 441 0.99
12 14 0.0012 0.091 13.4 0.3 1 20 447 466 447 469 0.93
13 14 1.6e-05 0.0012 19.3 1.3 2 23 476 497 475 497 0.97
14 14 2.1e-06 0.00016 22.1 1.4 1 23 503 526 503 526 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATTAAAGCTGAGCCTATGAGTTTCTACACATCACATTCACATATAAACACCGGTCCGCCTACAATAGTCCGTTCAGATTCACATGGCATCATTATGAACCAGCACCTTCCCCAAGAGGACTCCAAAGACAGCCTCATACAACACCAAGTACACCAACAGGAGCTGCTGGAACAGCACCAACAGGATATGCAACATGAACAGGATGATGATGTTGATAATCTAAGTTTCAAAGGTATGGACGATGAAGGTGTTGAAATGGACATGGACGCACGGCAATGTTCTCAGGGTATGGGTGTCGATATGGGTTCGGTTCAGACGAAGATGGAAGTGTCTAACGGTCAAGGTGTACCACGATCTAAACCTCAAGCTTGTAAGGTTTGCGGGAAAGTGTTGTCATCGGCGTCTTCGTATTATGTCCACATGAAACTACACTCTGGCAACAAACCTTTTCAGTGCACGGTATGTGACGCAGCGTTCTGCCGCAAGCCATACTTAGAAGTGCACATGCGCACGCACACAGGAGAAAGACCTTTCCAATGCGATCTATGTCTCAAGAGATTTACGCAGAAGTCCAGTCTCAATACGCACAAACGTGTACACACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGCTTCACTCAGAAGTCCAGCCTGGGCACTCATAAACGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGTCCATTCGCGTGCGGGCTTTGCCCGGCGGCGTTCGCCCGTCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATCCATAGACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCGGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGGACGCACACGGGTGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCGAGTCTCAACATTCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGTCTGCAGTGTCCGGCGGCCTTCACTTGCAAGCAGTATCTGGAGATCCACAATCGAACGCACACGGGCGAGCGGCCCTACCAGTGCGACGTGTGCCTCAAGAGATTCGCGCAAAAGTCTACGCTGAACATACACAAAAGAACGCACACGGGGGAACGCCCCTACGCATGTGATATATGTCAGAAAAGATTCGCTGTGAAGAGTTATGTTACGGCTCACAGGTGGTCGCACGTAGCGGACAAGCCGCTGAGTTGCGAGCGTTGTTCAATGACATTCACGTCCAAGTCTCAATTCGCGTTGCACATTCGTACGCACGCGGCCGGACCTTGCTACGAGTGTAGCGTGTGCGGTCGCACGTTTGTACGGGACAGCTATCTAATACGTCATCACAATCGCGTGCACCGCGACAGCCACAGTAATATGTCTGCTAATAGTGGCGTTATAAGCAACGCTGGTGGGGCAGGAAATTCAGGCAACTATGACTCTCCTGGCGTCTGCGATTTGAGCTTTGTCCCTATGGTGAACCGTTACCTGACGTCACAAGGCACACAAGTCTCGCTTGACGGCACAACAAAGATGTCAGCCATGTCACCACAGTCCATCGCTTCTATTTCGTCCCCCCCTCCGTCGCACACGCCTACCCCCCAGCCACAACAGATGACGTCAGGGATGCGACTATCGGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHSHINTGPPTIVRSDSHGIIMNQHLPQEDSKDSLIQHQVHQQELLEQHQQDMQHEQDDDVDNLSFKGMDDEGVEMDMDARQCSQGMGVDMGSVQTKMEVSNGQGVPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLSCERCSMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRHHNRVHRDSHSNMSANSGVISNAGGAGNSGNYDSPGVCDLSFVPMVNRYLTSQGTQVSLDGTTKMSAMSPQSIASISSPPPSHTPTPQPQQMTSGMRLSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01202639;
90% Identity
-
80% Identity
-