Prap004237.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- -
- Assembly
- GCA_905147795.1
- Location
- LR990597.1:326510-331028[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-06 0.0053 16.6 0.0 7 35 45 72 41 77 0.88 2 2 0.0091 8 6.4 0.0 4 34 222 251 219 261 0.86
Sequence Information
- Coding Sequence
- ATGGATGGAATCCCTCTGAACGTGCACGCGAGGCCGAGGCTAGTCGGACGGCGACCGAATGCAATCGTCAACATAGAGACAGATGTATTTCAAGAGAAATCATACAAGCAGTATTCGTCGCAGCATCTGCGAGACGCGTTGATTGCTGTGAAAAAGGGATATAGCGTCTATGCTGCTTCAAATAAATATGGCGTGCCACGGAAAACTTTACGGAACTGGATGGAAAAGTATGATATAAAAAGTCAATTTTCTAAAGGACGACGCGGGACAAATAGGCCGACACAAATTTTGGACCCTTTAGACTTAATGTCGGAAACCAGGTCCGAGAGGTTTGAAGATGAGTTTGCGATAGCCAACGTGCAGTGTCAATACGATGGAAGTGATTCTGAAAAATCTGAAGGGTCAATACGCACTACGGGTGTCACTGGAGAGCACAACTATGACACTAGAGATGAGCCACCAGCGTTTATTATACAGCAAGTGGCAACGCCGCCAACTTCGCAGTCCAAAGGACCGTTCGTGGAAGTGAGACCCACCATCATGACTATTGGCCCAGGGTACGGGCCCTCCGTCAATGTGATACACGTCGGGGATCGGCAACCGAGCAGCCAATCCCAAGGCCCAGAATTCAACATGAACAAGCGAATCCGGCGGAGCGAGGTAGAGCTGCGGCAGGCGGCCGACTGCGTCAGTCGAGGCCTCACCTTCCAAACTGTCTCTGAGCAGTTTAACATCCCCATATCTACTATACGATTCTTCATGGCGCGCAAAGGTATCCTACCGAGACGGAGGCGAGGACGGAGTGCTCAATTTAGTCGCCAATCCACTAGCCCTGAGCCACCTTTTCACATGCAACACTTCAAGTTGCCCAACATGCTCGCGTTGCCAGCCGAAGACGAACCCCCGCAAACCTAG
- Protein Sequence
- MDGIPLNVHARPRLVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRRGTNRPTQILDPLDLMSETRSERFEDEFAIANVQCQYDGSDSEKSEGSIRTTGVTGEHNYDTRDEPPAFIIQQVATPPTSQSKGPFVEVRPTIMTIGPGYGPSVNVIHVGDRQPSSQSQGPEFNMNKRIRRSEVELRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRSAQFSRQSTSPEPPFHMQHFKLPNMLALPAEDEPPQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01202410;
- 90% Identity
- iTF_01202410;
- 80% Identity
- -