Prap010372.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- -
- Assembly
- GCA_905147795.1
- Location
- LR990607.1:2125496-2126164[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-13 4.1e-10 39.4 0.0 2 41 11 50 10 54 0.92
Sequence Information
- Coding Sequence
- ATGGCAAAGAAAATTTATAACTCTTGGAAGCAAGATGACATGGATGAGGCTCTGCAGCAACATCGTGACGGTAAATTGGGATTCAATGAAGCATGTAGACTATATTCTATACCTAAACCTACTTTCCGACGTCATTTAAGGGGTTTAAATAAAACGAGTAAATTCGGCAGACCAAATGATATGACAACAGAAATGGAAAAGGAATTAGCGCAGCATATACTTAACATGGAGTCTGCGTTCTTTGGATTAACTGTGACCAATGTCAGGAAACTTGCTTACCAATTTGCTGAAAAATATAAATTACCTCATCGCTTCAACAAGGAAAAGGAAATCGCCGGCAAGAAATTGTTTGCTAGGTTCATGAAGGAACATCCAATCTTAACGCTGCGTGTGCCAGAGCCGACATCCATGGCAAGAAGTAAGGGGTTTAATAAAGAGCGTGTAAATGAGTTCTTTGACAAATACGAAGAAATATTGGAAAAACACATGTTTACTGCCGATAAAGTGTATAACGTCGATGAAACTGCCTTATCCACTGTACACAAACCTTCTAAAATCATTGCTCAAAAAGGTAAACACCAAGTTGGGGCACTCACAAGCGGAGAAAGAGGTCTGGCCACTACATGTTTGTGTGCGATGAATGCTGCAGGTGAATACCGCCCATGTTGA
- Protein Sequence
- MAKKIYNSWKQDDMDEALQQHRDGKLGFNEACRLYSIPKPTFRRHLRGLNKTSKFGRPNDMTTEMEKELAQHILNMESAFFGLTVTNVRKLAYQFAEKYKLPHRFNKEKEIAGKKLFARFMKEHPILTLRVPEPTSMARSKGFNKERVNEFFDKYEEILEKHMFTADKVYNVDETALSTVHKPSKIIAQKGKHQVGALTSGERGLATTCLCAMNAAGEYRPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264341; iTF_00635321;
- 90% Identity
- iTF_01264341; iTF_00635321;
- 80% Identity
- -