Prap009856.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- lov
- Assembly
- GCA_905147795.1
- Location
- LR990603.1:6241304-6243450[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-18 9.1e-16 57.5 0.0 1 44 59 102 59 103 0.96
Sequence Information
- Coding Sequence
- ATGGACTCTCCATTGGGTCTGTTCCCCCCCGGTATGGAGCACAAGATGTACCCCCTGATGGACGTGGAGCACCGGCCTCCCCCCCTTGACGCTCAGCTCTTCACCAACGTCAAGAAGAAATGGCGACCAAAGGGACAGCACAGTGCGCCGCGCGGTGGACCACCACGCTCCTGGACAAACGCTGAGCTCACAGAAGCCCTTCAGCACGTGTGGAATAAGAAGATGACGACGAGCCAGGCGTCAAGAATATTCGGCATCCCATATAATTCTCTTCTCATGTACGTTCGAGGAAAGTATGGAAAAAGTTTGAAATTAGAGCAGCTAAGAAAAGACTGTATAGGCGGGCCTTTAGAGGTGTTAAATTTAAATTCCGGTAACAACAACAACAACCATCCATCAAGCAAACACAGTGTCAAAGAGGAACAGCATCAGAACATAGGCCAACGACCGGCGAGCTCCGAACCTGATATCTCCTCGAATCCGATGTTCAACCCCTTCCAACAGGGCTTTTACCCTGAATTCCCACCAGGATTCCCCATGCCGCTGAACATGCTCCACCTGTTACCGCCCAGTGATAAAGCAAGAGAACTATACCAATCCATGCCAATGGCTTTGGACTCTCTGTCTGGAGTGGCCAAGGAGGAGGATTGCAAGAGCGACCGATCAAAGGAAAACTCAGCTGATGAGGAGGGCGATACGTATCGTGCTCCTTCACACCCGCCCCACCCCCCGGACAACCGCACTCTTCTTCATCACAACGGCCAGGATTAA
- Protein Sequence
- MDSPLGLFPPGMEHKMYPLMDVEHRPPPLDAQLFTNVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLEVLNLNSGNNNNNHPSSKHSVKEEQHQNIGQRPASSEPDISSNPMFNPFQQGFYPEFPPGFPMPLNMLHLLPPSDKARELYQSMPMALDSLSGVAKEEDCKSDRSKENSADEEGDTYRAPSHPPHPPDNRTLLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00771022;
- 90% Identity
- iTF_00430566;
- 80% Identity
- iTF_01203966;