Basic Information

Insect: Pieris napi
Gene Symbol: ush
Assembly: GCA_905475465.1
Location: FR997701.1:5506844-5603495[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0093 0.81 10.7 0.2 1 20 139 158 139 160 0.94

2 9 7.5e-05 0.0065 17.3 0.9 1 23 197 219 197 219 0.98

3 9 0.12 10 7.2 1.2 3 20 250 267 249 269 0.93

4 9 0.017 1.5 9.9 3.9 2 21 509 528 508 529 0.95

5 9 0.01 0.89 10.6 0.1 3 21 557 575 555 576 0.90

6 9 3.6 3.1e+02 2.6 0.0 2 23 604 625 603 625 0.93

7 9 0.0074 0.64 11.0 1.3 1 23 631 653 631 653 0.99

8 9 0.39 33 5.6 0.7 1 23 690 713 690 713 0.95

9 9 0.26 23 6.1 1.0 2 20 744 762 744 764 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0093	0.81	10.7	0.2	1	20	139	158	139	160	0.94
2	9	7.5e-05	0.0065	17.3	0.9	1	23	197	219	197	219	0.98
3	9	0.12	10	7.2	1.2	3	20	250	267	249	269	0.93
4	9	0.017	1.5	9.9	3.9	2	21	509	528	508	529	0.95
5	9	0.01	0.89	10.6	0.1	3	21	557	575	555	576	0.90
6	9	3.6	3.1e+02	2.6	0.0	2	23	604	625	603	625	0.93
7	9	0.0074	0.64	11.0	1.3	1	23	631	653	631	653	0.99
8	9	0.39	33	5.6	0.7	1	23	690	713	690	713	0.95
9	9	0.26	23	6.1	1.0	2	20	744	762	744	764	0.92

Sequence Information

Coding Sequence: ATGTTATTGTGGCTACGGTACCTGAAACAGCTGGAGCTGGCGTGCGCTAGTGTCGCCGAGTTGCCGCCAGGCGGCGTGGACGACAAAATGTGTGAGGACGAGGAATGGGGAAACGAGACCGAGGCGATGCCGGCAGAACCTCATACGCCAAGTTCTGGAGGCGAGCGCGTCGCCTCCAGCGGTGCTGCATCCCCAGACTCTGGGAGCTCTCCGGCGCCCTCCCCACCCAGACTGCGCCTTAACACAAACCTCGCTACGGATCCTGCGCTCGCGCCTCAAGCGACCACGCTCAAGCACGAGCCTCCGTCACCTTCACCGCCACCGCCATCCGTGCAGCAAGCCAGAGATTTCATTGCGCTCACCGCGGCAAACTTCCCTGCCTTATTTCCCGCTGCAATCCCCACACCCCCCGGATACAAATGTATGCCGTGCGGAATACGATATTCCTCGTTAAGCACACTTCAAGCACATCAAGAGCATTATTGCTCTAAAAGACCATCTAAACCAGATAACAATGATTCGTCAAACGAGCAAACGGCTGACAGTGAATCTGGTGACAGCAAGACAAATCGGCCAGTGGGCAAACAATATGCTTGCACCTACTGCTCTTATAGCGCTGATAAGAAGGTCAGCTTAAATCGTCATATGCGAATGCATTCATCGTCACCTGTAAGTACTAGCACACCGGTGCCAACACCTACCTCGAACGGTCAAACTACAGAAGGTTCGCCGGCGCAAGACAGATATTGTGTGGACTGTGACATTCACTTTACCTCTGTTAAAACTTTTCGAGCCCACAAAGAACATTATTGCAATACTAGACAAGTTGTGAAGCAAGCGGTCCTGGCAGCTGCTAGAACAGGGTCAGCTACATCAGGCTCTGCACCTCCTTCTCCCGGGACTACTCCACCTGCGCAAAATCAATATGCCCTAGCATTACCAACTAACCCAATATTAATTGTACCGTATTCCCTATTACGAAGCGCTAGCACGTTGCCAGGTGCGACATTACCGGATCCTGATACTCCATGTTTCTTATTACCGAATGGTACATTTCAACCAATAAACCGACATATACCAAATATGAATGCTGATATTAAAGAGCCAGAAGTTTTAAAATCTGCAAATAGACCTCGTGAGGCGTCTAGAGATGCCGCAACTCCATTAGATCTGACCGTTAGACGCACACCTGAATCGGTGACCACTGATGACCATGAGAAGGAAAATAGAATACGTTCCACAACACCGGAACAGATTGTATGTGCTCCATCTCTTCCCGCTTCACCCGCCACGCCCTCACCTTCCAGGCTTTCTTCCTCTCCAAGTGGTGAAAGTTCACCAAAACGAAGGCGAAGAAATTCAAGGGATCCTACACCGAAACCTCTCAGGTTACCATCTCCTCCAGAGGAAAAATTCAGCCCCGTTATGCCACCTCAAATAATCCCATCCTTGCCTTTAAGACTTCCAACAGACTTGCCAATCACAACCGCATCACCTCAAGTGCTAGTCAAACAGGGAGTATCGAAATGCAAAGAATGCAATATTGTCTTTTGCAAATATGAGAACTATCGCATTCATAAAAGGCATTACTGTTCAGCTGGAGGAGAGGAACGCGCAAGTCCAGCGCCTCCGGAACCCGGGCCTCCTCCTCAATATCGACAACTGATCTGCCTTGCGTGTGGCATACATTTCAGCTCGATGGATAACTTAACTACGCATCAATTGTACTACTGTACAAAAAGAGAGACTCGATCCCCAAGAAGTGTACCCGAGGCGCCAAGACCTCCGTCAGGTTCTGAAGGAGGATGGAAATGCCCATGTTGCGAGGTGGTTTCACCGACTGCAGCGGCCGCACAAAGGCACATGGAAGCTCACGCTGGCGTCAAAGCTTTCCGTTGTACAATTTGTCGATATAGAGGAAACACGCTGCGGGGCATGCGAACACACATTCGTATGCATTTCCGAGAGAAGCCGTCTGACTTACAGGAGGAGAGCTTTATTTCGTGTGTTCTGGAAGATGACACCCGCGAGACTACCTCGCCCAGCCCTGGAGTGGGGGAACGCATACATCGCTGCGGAAGCTGTGCATACACATCCACCTATCGCGGAAATGTAGTTCGCCACGCCAGGCTGGTCCACGCTACTGAAGATCCAGAACCGGAAGAAACCACACCAATCCCGCCAGCCGATATTAAAAAGGAACCGGAAATCGATGAAGACACTCCCAACTATTGTAAATCCTGCAATATATCTTTCAAATACGTGAACACTTATAAAGCACATAAGCAATTTTATTGCAAAGCCGCAACACAGGATGCAACATCGAATAATAATGTTCCCGCGTGCGTTGCTGATGCTCCTGTTGTATAG
Protein Sequence: MLLWLRYLKQLELACASVAELPPGGVDDKMCEDEEWGNETEAMPAEPHTPSSGGERVASSGAASPDSGSSPAPSPPRLRLNTNLATDPALAPQATTLKHEPPSPSPPPPSVQQARDFIALTAANFPALFPAAIPTPPGYKCMPCGIRYSSLSTLQAHQEHYCSKRPSKPDNNDSSNEQTADSESGDSKTNRPVGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSTSTPVPTPTSNGQTTEGSPAQDRYCVDCDIHFTSVKTFRAHKEHYCNTRQVVKQAVLAAARTGSATSGSAPPSPGTTPPAQNQYALALPTNPILIVPYSLLRSASTLPGATLPDPDTPCFLLPNGTFQPINRHIPNMNADIKEPEVLKSANRPREASRDAATPLDLTVRRTPESVTTDDHEKENRIRSTTPEQIVCAPSLPASPATPSPSRLSSSPSGESSPKRRRRNSRDPTPKPLRLPSPPEEKFSPVMPPQIIPSLPLRLPTDLPITTASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGEERASPAPPEPGPPPQYRQLICLACGIHFSSMDNLTTHQLYYCTKRETRSPRSVPEAPRPPSGSEGGWKCPCCEVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFREKPSDLQEESFISCVLEDDTRETTSPSPGVGERIHRCGSCAYTSTYRGNVVRHARLVHATEDPEPEETTPIPPADIKKEPEIDEDTPNYCKSCNISFKYVNTYKAHKQFYCKAATQDATSNNNVPACVADAPVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_01205305;
80% Identity: -