Basic Information

Insect: Pieris napi
Gene Symbol: -
Assembly: GCA_905475465.1
Location: FR997717.1:3383355-3397771[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.034 3 8.9 0.3 1 23 343 365 343 365 0.98

2 11 0.0057 0.49 11.4 8.4 1 23 372 394 372 395 0.94

3 11 0.14 12 7.0 1.9 1 23 399 421 399 421 0.97

4 11 0.047 4.1 8.5 1.8 1 23 426 449 426 449 0.97

5 11 0.032 2.8 9.0 0.2 1 23 453 476 453 476 0.93

6 11 0.019 1.6 9.8 0.1 3 21 490 508 489 513 0.93

7 11 0.3 26 6.0 0.4 2 23 555 577 554 577 0.95

8 11 0.0072 0.62 11.1 0.7 2 20 593 611 592 614 0.91

9 11 2.9e-05 0.0025 18.6 0.2 1 23 620 642 620 642 0.97

10 11 6e-05 0.0052 17.6 5.6 1 23 649 671 649 671 0.98

11 11 2.7e-05 0.0023 18.7 4.0 1 23 677 700 677 700 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.034	3	8.9	0.3	1	23	343	365	343	365	0.98
2	11	0.0057	0.49	11.4	8.4	1	23	372	394	372	395	0.94
3	11	0.14	12	7.0	1.9	1	23	399	421	399	421	0.97
4	11	0.047	4.1	8.5	1.8	1	23	426	449	426	449	0.97
5	11	0.032	2.8	9.0	0.2	1	23	453	476	453	476	0.93
6	11	0.019	1.6	9.8	0.1	3	21	490	508	489	513	0.93
7	11	0.3	26	6.0	0.4	2	23	555	577	554	577	0.95
8	11	0.0072	0.62	11.1	0.7	2	20	593	611	592	614	0.91
9	11	2.9e-05	0.0025	18.6	0.2	1	23	620	642	620	642	0.97
10	11	6e-05	0.0052	17.6	5.6	1	23	649	671	649	671	0.98
11	11	2.7e-05	0.0023	18.7	4.0	1	23	677	700	677	700	0.95

Sequence Information

Coding Sequence: ATGAGGTGCTGTGTAAAATCCTGCAAAAATGATTCGAGAACTATCTCCAAATCCCACGGCATTACATTTCATGTGTTTCCGACCGAATCAAAAATGCGCCAAGCCTGGTTAAAAGCAATAGGCAAGGAATCATGGTCTCCAAGAGAACGAAGTGCTGTCTGTTCAGACCACTTCATGATTGAAGATATTTTTGTCACCAAGAGTGGTTTAAGAAAAGTGAGGAATGGTGCTGTACCAATTTCTGATAGTAGTGTATGCAGTTACAATGAAAATACTGTTAATCTTTTGGTGTGTAGAATATGTCTCGGTTCAGATGTGAAGTTATTGCCTATTGGAAAGTTTAGTTTGGAACAAACATATGAACATGTTACAGGACATGCTATATCAAAAGGAGATAATTTACCTCAATACATTTGTTTTGAATGTGCACAGAGGCTGACAAACTGTCATATGTTTAAATCAAAGTGCTTGAAATCTAGGAGGCTTTTATTGGATCTGATAGCAGACAATAGTATCATTAGTATAGATAGTATTAAATCAATAGACAGACAAACACATAAACTAACATCAGACCTGTCTATAACAATTTTGGATCCAGATAAAATAGTCAATCTAGAATATGTCGAAAATATAAATAAGATTGAAATTGAAAACATACCCGAGCAAGATAAAAACGATATATTTGTACAAGAGTTACCGAAAGACTTTGATGACGATTTTAATGATAGAGATGATTTAAATGATAATCATTTTAATGATGCGGATAATGTTAATGATAAAGATTATGATAAATGTGACAAAGATTACTCCTCTGATGATAGTCTACCTCTAGAGTTGCAAAGGAAGAAGCGTAAAAAGACGAAGAAGGTGAAAAAAGTCGACGAACCAAAGATCGATAGGCGACGGAAGCCATTTTTGAATGCAGATTTAAATGAAACGCTGTTCACGATCACGGACCTGACGGTGGAGGAGCAAATGGCCGAGATTGAGAAGAGGCAGGAATCGGCGAATTATAAAAATGCAGTATTCAAATGTGGCGAGTGTTTTAAGGGGTTTTTGGATGAAGACGCTTATAATGGACATATGACACGACACACTAATGAATGCGGCGAACACGAATGCGCAATATGTAAAACACATTTTAAACATCCACACGCGCTGCGCAAGCACATAACAGCGCATCACACACAGAGATATAACTGTAATAGGTGTCCGTATGTCACTACGCATAGACAAACTGCTCGACTCCACGAACGTTGGCATAAAGGGACGAAGTACCAATGTCCGCATTGTCAAGATGAATTTGTTAAATTTACAACATATATGGGACATATACGTATAAAGCATCCTTCTGACTTCATATGTGTTCTCTGTGGTTATTCCTTCGTAAGTGAGAAAGGGATAGAACTACATAAGAAGTTAAAACATCGATTGGATGATGGAAAAATGCCCGACGATGGGCCGCTTTGTGAGTTATGCAACGTTCGTTTTGTATCCGCGGAGGCGTATAAGAGACATTTAAGTGTGTCCGCCAGACATACCAACGATTCAAAAGACAAGTCGAGGAAAGGCAGGAAAACACGCGAGAAAATGGAGAAAAACGATATTTTTGATAGGAAGAAAAATTATCCGAGCCAATTGAGAAAAGCTGAAGGACCTATACCTTGTGAACAGTGCGGCGTCGAGTTGGAAGACTCCCGCGCATACCACAGTCACTTCCGACGACAGCATCCAGACAAGAATCGAACCAACTACCCCTCGATGAAGTCGCCTTGTATGTGCGAGGTTTGCGGGAGAATGTTTCAGAGTTACGCCCTCCTTAAGGACCATCGCTGGGTACATACTGGCGAGCGTCCGTTCGCGTGTTCAATATGCGGCAAATCGTTCCGTATGAAGCAACGTCTAGTTGCCCATGGGCGCGTGCACAGTGAACTGCGAGCGTCCTACACATGTGCCATGTGCGGGAAGAGCTTCTCGACCCATAGTAATTGTCAGCGGCATATGTTTATTCACACCGGCCTCCGTCCATACAAATGCGAGATGTGCGGCAAATGTTTCAAACACGCGAGCGAAAAGCGAGCTCACATAACATATGTGCATCTTAAGAAACCCTGGCCCAAACGGAGCCGAGGGAAACGGACTGGCAAGGGCCCCCTAGATTCAGGGGACATGGCAGGTGAAATGGAGTCCCAGGTGTGGCCGACACCATGTGACCCCAAAATTCTCGACGTCAACCCTCTAATAGATAAGTCTATGTATTATAATCATAAAATGTAA
Protein Sequence: MRCCVKSCKNDSRTISKSHGITFHVFPTESKMRQAWLKAIGKESWSPRERSAVCSDHFMIEDIFVTKSGLRKVRNGAVPISDSSVCSYNENTVNLLVCRICLGSDVKLLPIGKFSLEQTYEHVTGHAISKGDNLPQYICFECAQRLTNCHMFKSKCLKSRRLLLDLIADNSIISIDSIKSIDRQTHKLTSDLSITILDPDKIVNLEYVENINKIEIENIPEQDKNDIFVQELPKDFDDDFNDRDDLNDNHFNDADNVNDKDYDKCDKDYSSDDSLPLELQRKKRKKTKKVKKVDEPKIDRRRKPFLNADLNETLFTITDLTVEEQMAEIEKRQESANYKNAVFKCGECFKGFLDEDAYNGHMTRHTNECGEHECAICKTHFKHPHALRKHITAHHTQRYNCNRCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFICVLCGYSFVSEKGIELHKKLKHRLDDGKMPDDGPLCELCNVRFVSAEAYKRHLSVSARHTNDSKDKSRKGRKTREKMEKNDIFDRKKNYPSQLRKAEGPIPCEQCGVELEDSRAYHSHFRRQHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHRWVHTGERPFACSICGKSFRMKQRLVAHGRVHSELRASYTCAMCGKSFSTHSNCQRHMFIHTGLRPYKCEMCGKCFKHASEKRAHITYVHLKKPWPKRSRGKRTGKGPLDSGDMAGEMESQVWPTPCDPKILDVNPLIDKSMYYNHKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01206897;
90% Identity: iTF_01205764;
80% Identity: iTF_01205764;