Basic Information

Insect: Pieris napi
Gene Symbol: Zic2
Assembly: GCA_905475465.1
Location: FR997717.1:4270256-4285041[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.5e-05 0.0021 18.8 3.3 1 23 266 288 266 288 0.99

2 11 0.00051 0.044 14.7 0.2 1 23 295 317 295 317 0.99

3 11 0.0043 0.37 11.8 0.4 1 23 321 344 321 344 0.98

4 11 5.4e-06 0.00047 20.9 1.9 1 23 351 374 351 374 0.97

5 11 0.00068 0.059 14.3 0.0 2 23 380 401 379 401 0.97

6 11 0.00019 0.016 16.1 3.5 1 23 407 429 407 429 0.96

7 11 0.0001 0.0089 16.9 1.7 1 22 435 456 435 460 0.94

8 11 2.5e-05 0.0022 18.8 3.1 1 23 468 491 468 491 0.95

9 11 3.2e-05 0.0028 18.4 0.3 1 23 497 520 497 520 0.97

10 11 6.9e-07 6e-05 23.7 1.4 1 23 529 551 529 551 0.98

11 11 1.6e-05 0.0014 19.4 1.1 1 23 557 580 557 580 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.5e-05	0.0021	18.8	3.3	1	23	266	288	266	288	0.99
2	11	0.00051	0.044	14.7	0.2	1	23	295	317	295	317	0.99
3	11	0.0043	0.37	11.8	0.4	1	23	321	344	321	344	0.98
4	11	5.4e-06	0.00047	20.9	1.9	1	23	351	374	351	374	0.97
5	11	0.00068	0.059	14.3	0.0	2	23	380	401	379	401	0.97
6	11	0.00019	0.016	16.1	3.5	1	23	407	429	407	429	0.96
7	11	0.0001	0.0089	16.9	1.7	1	22	435	456	435	460	0.94
8	11	2.5e-05	0.0022	18.8	3.1	1	23	468	491	468	491	0.95
9	11	3.2e-05	0.0028	18.4	0.3	1	23	497	520	497	520	0.97
10	11	6.9e-07	6e-05	23.7	1.4	1	23	529	551	529	551	0.98
11	11	1.6e-05	0.0014	19.4	1.1	1	23	557	580	557	580	0.96

Sequence Information

Coding Sequence: ATGGATTCCGAAGATTCCAAAGAAATAAAGGTAGAGACTAATAATGCACCGATTTGCCGATGTTGCTTATCTACGGACCGGCGTATGAACAAAATTGATAATTTTTGCTACCTTCTTTTGGATTTGGCTGGTATTATTGTGTCAGAATCAGATGGTCTTCCCAAATATGTATGTTGGGAGTGCTCTGCTTTGCTTAGGAAATCTGTGAAGTTCAAACAGAAAGTATTACAAATCCATTCAGCATTGTGCGATTATAATAATAGATGTGCTCCTTTCTCAATAGATGGCCAAGACCCAGAGCTTACTCAATATGCAATGCCATACTTAGTTAAAACCCCCACACTGACGTTTTGTAACAATCCAAAGAGCAAAACTGGGTTTTATGATGTATTGCAGCATGAGACACAAAGACTAGGAATAGAGTTGTTACCTCTACCGCAGGATATTAGTGCAGACATAAAACATGACATTATTGACAATGATAATATAATTAGTGATTTAATCAAGAATGAAAATGTTCAGACTGATAATGAAGAAGACTATATACCTGATAATGGTGATAGAACAAATGATACAGATGATTCAAATGAAAGTCTTTTAGATGTTAAGAAGTTACGAGTGAGAAAGAGAGTGAAAATTAAGAATAAAGAAGATACAGCTGAAGTGAAGGTTAACCGTAGAGTAAAAAATAGTAAGCCGGACATAGATGAAACTAAGATACGCATTCTACGATTAGATCCGATGGAACAGCTAAGACAGCGAGAGGAGGAATGTAAAAAGACACTCACCTTCCCATATGTATGTCATTTGTGTTACAAAGGTTTTATTTACGAGTCTAAACTACAAAATCACATGAAGAAACACAGTCCTTCACGTGGTTCGTACAAATGCGAGATATGCTCTATGTATTTACCAACGAACTACAGTCTGTCCGTACATATGTTGATACACACGCGGCGGTTCGAATGCTTGCAATGCGGACGACAGATGACCGACAAGGATTCTATTATTAATCATTATAGAACAGAACACGAAGGTATTATATCCATGTTCACATGTCATGTCTGTGGAAAGATATTCAATAATTCTAAAACGCTCCGCGGCCATGTTCGTAATCTTCACACACTGAAGCGGGTGAAATGCGACGAATGCGACAAGACACTCATCAACGCCGACGCATTGGCTGAACATAAATTGATCCACCAAGGCGTAAAGGAGCACGCGTGCGGTGTTTGCGGCAAGCGGTTTCGTACAAGACAACAGATGCGGTATCATCAGACGAGGCATAGCGATGCTAAGAATTACTATTGTGTGGAGTGTGATATTAGATTTAAAACCTCGCACGCGCTGAATCAACATCTCAAAAAGACTGCCAAACACATAGATGAACAAAGTCTTATTCACCCGTGTCCCCGATGTAGCAAGCGCTTCACAAACCTATCAGAATTGACTCACCACCTCTCCGTCCAACACGACGGTGTTCGCGCCCACCGGTGCCCGACGTGTCCGGCTGCGCTCGCGACAAAATCGTCCCTACAGAAACACGTGCGAATGGTGCATTCCGGTATTAAGGTGCACGCGAAACACGTGTGCGACACGTGCGGACGTGTGTTTAATGCAAAAAGCACTCTCACGAACCACATCCGCACACACACGGGCGAAAAGCCGTTTGAGTGCGAGCAGTGCGGACGGCATTTCGCCCAACGGACTGCACTCAAGACGCACGTCAAACTCGTGCATCTGAAACTTCATAGGAATGCTAAGATAAAACCAAAACAACCTGAAGATATTATTAAGTACAAAGAAGAGTCGCCATTAGTTTTCGAATGGCCACGACAGAGCGCGCCCGGTTGCGAATTCTTTACCGTAACAGCCGGACCGTAG
Protein Sequence: MDSEDSKEIKVETNNAPICRCCLSTDRRMNKIDNFCYLLLDLAGIIVSESDGLPKYVCWECSALLRKSVKFKQKVLQIHSALCDYNNRCAPFSIDGQDPELTQYAMPYLVKTPTLTFCNNPKSKTGFYDVLQHETQRLGIELLPLPQDISADIKHDIIDNDNIISDLIKNENVQTDNEEDYIPDNGDRTNDTDDSNESLLDVKKLRVRKRVKIKNKEDTAEVKVNRRVKNSKPDIDETKIRILRLDPMEQLRQREEECKKTLTFPYVCHLCYKGFIYESKLQNHMKKHSPSRGSYKCEICSMYLPTNYSLSVHMLIHTRRFECLQCGRQMTDKDSIINHYRTEHEGIISMFTCHVCGKIFNNSKTLRGHVRNLHTLKRVKCDECDKTLINADALAEHKLIHQGVKEHACGVCGKRFRTRQQMRYHQTRHSDAKNYYCVECDIRFKTSHALNQHLKKTAKHIDEQSLIHPCPRCSKRFTNLSELTHHLSVQHDGVRAHRCPTCPAALATKSSLQKHVRMVHSGIKVHAKHVCDTCGRVFNAKSTLTNHIRTHTGEKPFECEQCGRHFAQRTALKTHVKLVHLKLHRNAKIKPKQPEDIIKYKEESPLVFEWPRQSAPGCEFFTVTAGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01204263;
90% Identity: iTF_01204263;
80% Identity: -