Pnap009963.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- -
- Assembly
- GCA_905475465.1
- Location
- FR997712.1:2029939-2033659[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 9.4 8.1e+02 1.3 0.3 2 23 73 94 73 94 0.93 2 23 0.054 4.7 8.3 2.7 3 23 118 138 116 138 0.95 3 23 0.013 1.1 10.3 0.1 1 23 142 164 142 164 0.95 4 23 0.039 3.4 8.7 0.2 1 15 169 183 169 192 0.78 5 23 0.0013 0.12 13.4 1.2 1 23 198 221 198 221 0.96 6 23 8.3e-05 0.0072 17.2 2.6 1 23 228 251 228 251 0.98 7 23 6.7e-06 0.00058 20.6 3.4 1 23 258 280 258 280 0.97 8 23 0.0014 0.12 13.3 0.4 1 23 350 373 350 373 0.98 9 23 0.19 17 6.6 0.2 2 23 400 422 399 422 0.89 10 23 3.9e-05 0.0034 18.2 1.4 1 23 444 466 444 466 0.99 11 23 1.9e-05 0.0017 19.1 0.5 1 23 470 492 470 492 0.98 12 23 0.051 4.4 8.4 0.2 1 22 526 547 526 549 0.87 13 23 0.0059 0.51 11.3 3.7 1 23 556 579 556 579 0.97 14 23 0.081 7 7.7 0.3 1 20 642 661 642 664 0.89 15 23 0.05 4.3 8.4 0.0 2 23 688 710 687 710 0.93 16 23 0.043 3.7 8.6 3.0 2 23 733 754 732 754 0.96 17 23 0.0049 0.43 11.6 3.3 3 23 760 780 759 780 0.96 18 23 0.00035 0.031 15.2 1.4 2 23 786 808 785 808 0.91 19 23 3.9e-05 0.0034 18.2 1.8 1 23 814 837 814 837 0.97 20 23 0.0012 0.11 13.5 0.8 1 23 843 866 843 866 0.96 21 23 0.00015 0.013 16.3 0.3 1 23 872 894 872 894 0.95 22 23 6.5e-06 0.00057 20.6 1.2 1 23 900 922 900 922 0.99 23 23 0.0014 0.12 13.3 4.5 1 23 928 950 928 951 0.96
Sequence Information
- Coding Sequence
- ATGAAAAAGAACGCAACCACTATATTAGAATGTTGGAGAATCACACCGTTTAGGTGGAAGAAGAATCATTTTAAGTGTGCGTTCTGCGAGAATATTTTCACGTGTTGTACTGAATTACGGGAGCACGTTAAAATATGTTCGACGCATCACAGCGTCAAAGATATCTACAGCAAGTTTAAGGAAATGTCCCTGATTAATGTGGACGTCACAAACGCAGTGTGTAGGCTCTGTGCATGTCCCTTTTACAGCGTTCCCCAAATGAGACAGCATGTTATTGAACACGGCCTGGATTTCGATAGTTCTCACCCGGATGGCGTCCTCCCGTTCAGTCTAGATAACAATCTATGGTGCTGCCTGATATGCCGAGAGAAATTCAACAATTTCCTTAAATTATATGAACATATGAATACGCATTACCAGCATTATATATGTGCAACTTGCGGCAAAGGATACATGACTGCGCCAAGGTTGAGAAAGCATTCAGAAGTTCATTTAAAGGGGTCGTACCCTTGTGACAAGTGCGGGCGTATGTTCACAATGCGTGCAGCTAGAGATTACCATAAGGCCAACGTGCACGCCAAAGGTCCTAGATACGAATGCCCGCATTGTGACATGAGATTCTCTGGTTACTATGATAGGATGAATCACCTAAACCAAGCCCATAGAGCCAAAGAAGTAGCATACGAATGCTCCCACTGTGAAAAAACATTTAAAACTAGTGGCCAGCGTTCGGTTCATGTTAGGAGAGAACATTTTCCACAGCAAAGGAACTATAATTGTGATTATTGCGAATGGCACTTTAAAACAAATTATGAGTTGAAACGGCATATGGTCAAGCATTCTGGTTCCCCTATTGCGGATACTCGTGCTAAAGGTAGAAAGTTAAAAGAGCACGTCAGCGCTCGCCAAATGCTCAGGCGACGACGTGCGAATAACGAACTCCCGGAAGAGTCAGAGAGACGCATCGCTAAGACTATGATGCAAAGAAATGCGATAGCGCTCTTGGAATGTTCAACCGCTTGGGCATTTCGGTGGTTTCGATGCGCGTACTATTGCTCCTACTGTGATATTAAATTCTTAGAACCAAATGATTTACGTGATCATATACGCTCTAACCATTTACACCAGCAACCCACCAAAAAATTATTTGCAAAGCTCACAGAGAATAATATGCTTAAAGTTGAAATTTCTGACTTAAAGTGCAGGCTCTGCGGTCTTAATTTCAATACTATTGACGTTTTCAAAGAGCACTTGGTTTTGGTGCATCAGAAAAAGTTGTACCCTAATTATAGCGATGGCGTACTGCCGTTTAAGCTTAGCTCCAATGATTTTAAATGCCCCAAATGTAATATACGTTTTGCCTCTTTTTCGAAAATGAATGAACATATGAACAGCCATTTTAGAAACTATATTTGTGATACGTGTGGAAAAGGATTTGTGTCGAAATCCCGGTTTAGAGCTCACGTTCAGTCTCATGAAGTTGGTAGTTTTCCTTGTGGTGTATGTGATGAGGTCTTGGAGACGAGAACAGCTCGCATGTGTCACAGAGTAAAGGTCCATCTTAAAGGTGTTAAATACGCTTGCCCACGCTGTCCGGAAGTGTTTACTAAGTATAACGCGCGTCTCAAACATTTGGTTGAGAAACATGGCCAGCAGAAAATTTATTATCCCTGTGTTCATTGTGGAAAGCTATTCGAGACAAGCTGCAATAGATCAGCTCACTATAGAATGTCTCATAAGGTTGGAAAGAAGTGTTCGGATTTGAATAATTCTTGGAACGATAAACGCGCGGATAGACCAGACACTAAACCACCAACGAAATTATTATGGAAACAGAAAAGGAAATTTAACGATCAAAGAGACAACGCGGCTATTATTCTTGAGTGTTCTAACGCTTGCCCGTTTAGGTGGAGACGTGGATGTTATACCTGCGCGTTCTGTCCGAAAAACTTTGCCGATTTCGAGAGCATAAAGGAACATTCTGTAGAACATCCAAACAAAGTAGATGCTCTTAAATTCGCGCGTACTTTTGATTATGTTAAAGTTGAAGTGACGAATTTACAATGTAACATATGCCGTGAAGCAATGCCGAATTTAGATAATTTAAAAGAACACCTCGTGGTGGTTCATGAGAAACCTGTCATCAAAGATTTAGATTTAGGCGTAACACCATTTTTACTGATGAATAAAGAGCTGTCTTGTACACATTGTGGCGAACGATATCTCCAATTTACTAAATTAAACACACACATGAATCAACATTATCCAAACAATATCTGTTGTCACTGCGGTAAAGCGTTTTCTGCTGCCCATAGACTAAAAGCTCATCAAGTAATACACGAAACAGATAATAATAAATGTACTAGATGCGATAAGGTATTCGAAACTAGAGTGCAATTTAATAGACACGTTTATTTAACGCACACATCGGAGTTTAGATACCGTTGCCCCTATTGTAATGAAGTGTTTAAAACATACTCGGAACGTTTGAAGCATTTGAAAAACTCGCATGGTAAAAAAGTTGAATACCCTTGCAACTTTTGTCCAAGAGTATTTTCTATGTACAATCAAAGGACTAGACACATACAGCAGGTTCATATTAAACATAGGCCGTTTCTCTGTGAACAGTGTCCGTACAAGTTTGGAACTGCAGCACAACTTAGGAATCATATGGTGAAGCATGAAGGCGAGAGAAAGTTTCAATGTGAAGTCTGTAAGAAAATGTATGCGAGGATGAAGACTCTGAAAGAACATATGCGGATTCACAATAATGATAAACGTTTTGTTTGCGAATTTTGTAATAGTGGATTCGTTCAAAAGTGTAGCCTGAAGAATCACCTTAGAATACACCATCCTAACGTTGACAATGTTCAAATTTAG
- Protein Sequence
- MKKNATTILECWRITPFRWKKNHFKCAFCENIFTCCTELREHVKICSTHHSVKDIYSKFKEMSLINVDVTNAVCRLCACPFYSVPQMRQHVIEHGLDFDSSHPDGVLPFSLDNNLWCCLICREKFNNFLKLYEHMNTHYQHYICATCGKGYMTAPRLRKHSEVHLKGSYPCDKCGRMFTMRAARDYHKANVHAKGPRYECPHCDMRFSGYYDRMNHLNQAHRAKEVAYECSHCEKTFKTSGQRSVHVRREHFPQQRNYNCDYCEWHFKTNYELKRHMVKHSGSPIADTRAKGRKLKEHVSARQMLRRRRANNELPEESERRIAKTMMQRNAIALLECSTAWAFRWFRCAYYCSYCDIKFLEPNDLRDHIRSNHLHQQPTKKLFAKLTENNMLKVEISDLKCRLCGLNFNTIDVFKEHLVLVHQKKLYPNYSDGVLPFKLSSNDFKCPKCNIRFASFSKMNEHMNSHFRNYICDTCGKGFVSKSRFRAHVQSHEVGSFPCGVCDEVLETRTARMCHRVKVHLKGVKYACPRCPEVFTKYNARLKHLVEKHGQQKIYYPCVHCGKLFETSCNRSAHYRMSHKVGKKCSDLNNSWNDKRADRPDTKPPTKLLWKQKRKFNDQRDNAAIILECSNACPFRWRRGCYTCAFCPKNFADFESIKEHSVEHPNKVDALKFARTFDYVKVEVTNLQCNICREAMPNLDNLKEHLVVVHEKPVIKDLDLGVTPFLLMNKELSCTHCGERYLQFTKLNTHMNQHYPNNICCHCGKAFSAAHRLKAHQVIHETDNNKCTRCDKVFETRVQFNRHVYLTHTSEFRYRCPYCNEVFKTYSERLKHLKNSHGKKVEYPCNFCPRVFSMYNQRTRHIQQVHIKHRPFLCEQCPYKFGTAAQLRNHMVKHEGERKFQCEVCKKMYARMKTLKEHMRIHNNDKRFVCEFCNSGFVQKCSLKNHLRIHHPNVDNVQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -