Pnap022074.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- RpS13
- Assembly
- GCA_905475465.1
- Location
- FR997696.1:11679560-11686125[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.1e-08 4.8e-05 23.4 0.0 3 34 4 35 2 44 0.88
Sequence Information
- Coding Sequence
- ATGGATTCAGAGCATATGGCGGAAGTAATAAAATTAGTAAGAGAGAAACAAATGGGTTATTTAAAAGCTGGAAAATACTTTGATGTGTCAAGATCTACTTTGTTTTCATTATGTCAGAAAAACGAATTTTCTCCAGAACAAGCCGCAGCTACTACACTGGGAAAGAAAACTGTCGTGTTGGCAAAAAAAAAAAAGAATGAACCCGATGCCTTGATTGGATATACAGCTCCAGAATCTGAAGATTCGGAGTGTATTTTCTGTGGTGTGCTGTTTTCGAATGATACTCATGGGGAAACATGGATCAAGTATCTTATGTGTGGACTCTGGGCATCTCCGGCCTCTGACTATGCTCAATCTGCGCCATCTACGTCGAGGGAAGTCGATGATCCCGGGGAAATTATTCGGCCTACAACATTGGATCTCCCACAACCAAAGAAGGATAGCAAGCGAACCCAAAAAGCTGTTGCCAAGAGGTGGCACTTAGAACGTAACAGGAAAGACAAGGCCTGTAAATTCAGGCTTATACTTGTTGAATCTAGAAGCCACAGACTTGCCCGTTATTATAAGACTTATAGCGTAGTTCCTAACTGGAAGTACGAATCCAGCACAGCATCTGCTTTAGTTGCCTACGTATGA
- Protein Sequence
- MDSEHMAEVIKLVREKQMGYLKAGKYFDVSRSTLFSLCQKNEFSPEQAAATTLGKKTVVLAKKKKNEPDALIGYTAPESEDSECIFCGVLFSNDTHGETWIKYLMCGLWASPASDYAQSAPSTSREVDDPGEIIRPTTLDLPQPKKDSKRTQKAVAKRWHLERNRKDKACKFRLILVESRSHRLARYYKTYSVVPNWKYESSTASALVAYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -