Pnap010420.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- -
- Assembly
- GCA_905475465.1
- Location
- FR997712.1:2452079-2452570[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8e-08 2.7e-05 24.2 0.0 1 33 18 50 18 57 0.88 2 3 8 7.5e+03 -2.8 0.0 25 34 89 98 88 102 0.77 3 3 3.5 3.3e+03 -1.7 0.0 15 25 135 145 130 145 0.78
Sequence Information
- Coding Sequence
- ATGCCAAGAAATTATCAAAGGAAAGCAGGCAGACGAAACTATAAAAATTACACAGAGGAGACTTTAAGGCAATGTTTAGCGTCAATAGAAAACCGTGATTTGACCCAAAGGAAGGCTAGTAAAAAATATGGGATTCCACGCAGAACAATCATTAATCAATTAAAACTTTTAAGATCTCGAACACCATCGAGGCCACCCGGCGCTCCTATCACATTTACTGTAGAAGAAGAAAGAACATTCGTATCTTGTATCGAAAATCTAAGTGAATATGGTTTTCCTTTGACTACAATGGACCTTAGAATAGTAATAAAATCATATTTGGATAAAATTGGCCGTAAAGTGAACAAGTTCAAAGATAATTATCCAGGAATAGAATGGGTGTCCAGTTTTTTGAAAAGAAATCAGTCCTTATCACAAAGATTTGCTGCAAATATTAAACGGATAGAGCTGCGGTTGATCAGGATACCCTCAAAGAATACATTCAGAATTTGA
- Protein Sequence
- MPRNYQRKAGRRNYKNYTEETLRQCLASIENRDLTQRKASKKYGIPRRTIINQLKLLRSRTPSRPPGAPITFTVEEERTFVSCIENLSEYGFPLTTMDLRIVIKSYLDKIGRKVNKFKDNYPGIEWVSSFLKRNQSLSQRFAANIKRIELRLIRIPSKNTFRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334787;
- 90% Identity
- iTF_01334787;
- 80% Identity
- -