Pnap005847.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- -
- Assembly
- GCA_905475465.1
- Location
- FR997695.1:8218052-8219394[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-09 3e-06 27.3 0.1 1 37 14 50 14 58 0.89 2 2 4.4 4.1e+03 -2.0 0.1 29 38 86 95 86 99 0.81
Sequence Information
- Coding Sequence
- ATGGGGCGCTATGAAAGAAAAACTGTAGGTCCTTCATGGTCCAGAGAGGCTTTGAATGAAGCAGTTGAAGCTGTTCGATCGGATAGAATGTCTGGGTATGCAGCCGCATCAACCTTTGCTATCCCAAGAAAAACTATTATGGACCACGTCACAGATTCTAATGAAACGACATTAGTTGTTGTTGCAAAACATCACAGATCCTTATGGTACCATGATTTAGTGTCACTCGTGAACTTAAGCACAAGTAATATTGCACCAAAGTCAACTATGAAAAAAGTATGGCGCACTTTGCCCCCATCACCTTACGGGTTGCAGACCAAGAGCTAA
- Protein Sequence
- MGRYERKTVGPSWSREALNEAVEAVRSDRMSGYAAASTFAIPRKTIMDHVTDSNETTLVVVAKHHRSLWYHDLVSLVNLSTSNIAPKSTMKKVWRTLPPSPYGLQTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -