Pnap021981.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- -
- Assembly
- GCA_905475465.1
- Location
- FR997696.1:12458589-12462128[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6 2.4e+03 -1.2 0.4 31 43 34 46 33 47 0.82 2 2 2.1e-09 2e-06 27.8 0.0 5 39 53 88 51 93 0.88
Sequence Information
- Coding Sequence
- ATGTATAAGAACCCGCGAGACTATGACGAGTTCTCATTGTTACGTAGTAGGCAAAAGCGTATATCCAAAAAGTGCATGCTATCTTACGAACAGTTTTTCAACACCGTGGTTCGGCACTATAAACGAAAAACAACCACTACATATGATCTTCAAACATTAAAACAAGCTGTAGAGGAAGTACGAAGTGGCAAAATAAATTTGTACCAAGCGGCACGTAAATACAATATACCTTGCACGACTATATGTGATCGAATAAATAAAAAAAGAGGTGTCGTAAAAGAAACTCGTGGGCCACCCACCGTGATTGACACAGACAACGAGCTCAAACTAGCTAATGGTCTGCGAGTTATGGAGAAGTTCGGGTTTGGACTTACGTCTAAAGAAACACTGGATTTAGTTAGCATACATGTGATTCAAAATAATTACTTAACCCCGTTTAAAAACAACCGGCCTGGATATGATTGGTTTTCTGTTTTCAAGAAAAGACACAATCTGTCCTTAAAAAAGCCACAAGCAGTGGAGATGTCCAGGAAAGTTGCATGTGACCCTTTTATAGTAAACGAGTACTTTTGTATCCTTGAAGAGGTTTTGAATGAACTGGATTTAAAAGGAAGACCAGAAAAAGTTTGGAATCTGGACGAGTCAAGTTTTGGAAATGACCCTGATAAAACAAAAGTTGTTGGCGCCCGTGGATTTGCCAGTACAAGAACTATCGCATCATCTGGCAAAGATAACGTTACTATCTTGTTTACTGCCAGCGCCGCTGGTGATAAATTGCCACCATTAATTATAAATCGAGGAAAAAATACATGGGACCAATGGATGTCGGAACTAGGTTACATGAATACATCTTATGCTGCTACGCCAAATGGCTGGATAGATTCTAAAGTATTTGAAAAGTATATGTTCAATACTACCGTTATTGCGTTGTTAATTTTTGACGGTCATTCTACTCACATCCAATTGACAATTTTAGAAGAAGCACAAAAACGCGGAGTGACGATTATAAAGTTACCATCGCATGCAAGCCATTTACTGCAACCGTTAGATTTGTCAGTTTTCAAATCGATGAAAAATAGTTGGGACGAAAAACTGGTACAATGGCAACGATTGAAATGA
- Protein Sequence
- MYKNPRDYDEFSLLRSRQKRISKKCMLSYEQFFNTVVRHYKRKTTTTYDLQTLKQAVEEVRSGKINLYQAARKYNIPCTTICDRINKKRGVVKETRGPPTVIDTDNELKLANGLRVMEKFGFGLTSKETLDLVSIHVIQNNYLTPFKNNRPGYDWFSVFKKRHNLSLKKPQAVEMSRKVACDPFIVNEYFCILEEVLNELDLKGRPEKVWNLDESSFGNDPDKTKVVGARGFASTRTIASSGKDNVTILFTASAAGDKLPPLIINRGKNTWDQWMSELGYMNTSYAATPNGWIDSKVFEKYMFNTTVIALLIFDGHSTHIQLTILEEAQKRGVTIIKLPSHASHLLQPLDLSVFKSMKNSWDEKLVQWQRLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -