Pnap010266.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- -
- Assembly
- GCA_905475465.1
- Location
- FR997712.1:646050-647677[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-10 4.5e-07 29.9 0.1 2 44 16 58 15 59 0.96
Sequence Information
- Coding Sequence
- ATGATCGGGCGCTATGAAAGAAAAACTGTAGGTCCTTCATGGTCCAGAGAGGCTTTGAATGAAGCAGTTGAAGCTGTTCGATCGGATAGAATGTCTGGGTATGCAGCCGCATCAACCTTTGCTATCCCAAGAAAAACTATTATGGACCACGTCACAGGTCGAATGGGCCTAAAATCATTAAGTCTAGGCAGACCACCAGTATTTAAATATGAGACAAAATGTTTGCCTATAATGGAAAAAAATGGCTTCGGCCTGACTCGTACAGAATTTCTAGATATTGTTAAGGGATATGTCAATCAGAACGATCTAAAAGCACCTTTCAACGATGGTACTCCCGGCAAAGATTGGTTTTCAAGCTTCAAAAAGCGTTATAAGTTATCAATTAAAAAACTGCAGGCTGTAGAGGTTGCTCGTATGAATGCCACAGACCCATTTGTCATCCAAGAATTTTATGATATTTTAGACAGAGTGATTGCCGACTTAGGGCTTCAGGACAAGCCTGAGCGAATTTAA
- Protein Sequence
- MIGRYERKTVGPSWSREALNEAVEAVRSDRMSGYAAASTFAIPRKTIMDHVTGRMGLKSLSLGRPPVFKYETKCLPIMEKNGFGLTRTEFLDIVKGYVNQNDLKAPFNDGTPGKDWFSSFKKRYKLSIKKLQAVEVARMNATDPFVIQEFYDILDRVIADLGLQDKPERI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204816; iTF_01204817;
- 90% Identity
- -
- 80% Identity
- -