Pmel026185.1
Basic Information
- Insect
- Pieris melete
- Gene Symbol
- -
- Assembly
- GCA_963693345.1
- Location
- CAVNZK010000368.1:24123-37257[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.26 26 6.3 3.6 1 23 105 127 105 127 0.95 2 17 0.17 17 6.9 0.1 2 23 162 184 161 184 0.90 3 17 1.2 1.2e+02 4.2 6.1 2 23 207 228 206 228 0.97 4 17 0.047 4.7 8.6 0.2 1 23 232 255 232 255 0.96 5 17 0.00061 0.061 14.5 2.2 1 23 260 283 260 283 0.98 6 17 0.0052 0.52 11.6 1.9 2 23 291 313 290 313 0.95 7 17 7.2 7.2e+02 1.7 0.1 2 15 324 337 323 339 0.89 8 17 0.00041 0.041 15.1 0.6 1 23 441 464 441 464 0.94 9 17 7.4 7.4e+02 1.7 0.1 5 23 499 518 497 518 0.90 10 17 0.027 2.7 9.3 1.6 2 23 541 562 540 562 0.97 11 17 0.0006 0.06 14.5 1.1 1 23 566 589 566 589 0.95 12 17 0.0027 0.27 12.5 1.5 1 23 594 617 594 617 0.91 13 17 0.035 3.5 9.0 1.9 3 23 626 647 625 647 0.95 14 17 0.00015 0.015 16.5 2.1 2 23 658 680 657 680 0.97 15 17 0.00068 0.068 14.4 5.2 1 23 686 708 686 708 0.97 16 17 2.3e-05 0.0023 19.0 3.3 1 23 714 736 714 736 0.98 17 17 4e-05 0.004 18.2 5.3 1 23 742 765 742 765 0.99
Sequence Information
- Coding Sequence
- atggaCGCCGTTTCGCCCATTCACGGACAATTCGGACTACTTCCATATGGCGTGGCGCACGTTTCTGCCATTGATGGACGGCCACGGATGACGTCCATTTGGCCTGGACGCATGGATTTACTCCATTCGGATTCATGGACGTATCGTCTTAAAGAAGACACGGACATCCCCAAGAAGATTGATATAGATATAGAAACAGAAGAAAGCGAAGCAGATATTAAAAGATTACTAACCAATAATACTAAagacaattttaaagaaataattatatgcaCCAATGCTTCTCCAATACGAAGCAAAGTTGGACGTGAGTATCTATGCTGTTTTTGTACAGATAGATTCAAGGATCCCGCTAAATTAAAGGAACACTCTCGTAAACACTTATCAAGGTTAGATAAAAACCAATGCAGCGAACGAATTTTAAAGCAAGTAATTGATGGAAAGAACCGCATGCCGTTCATCAAATTAGATATAACCAATCTGACTTGTAAATTATGTGGAATGTTAATTAAGACTTTGGAGGAACTTTTGAAACATCTCGTTGAAATTCATAAGCGTATAATGCACGTGAATATAAAGAACCTAATAATCCCTTTCAAGTTTGAGACTCATGAGATGGTTTGTTGCATTTGTTGCAAGGAGTTCGCGTCTTTCAAATGTTTGGTTGAACATATGAATACGCACACGACGAATTTTGTTTGCGATCTTTGTTCAGCCACCTTCATCGCTATGGACAGACTGAAATCTCACATAAAATTGAGGCACGCGTTAGGCGAGTTCAAATGCAACTTTTGCccgaaaatatttaacatgaaGGTGAAATTATACCAACACGAACGGAGGATGCACAGAAAGGCGAATGAAGTCAAAAAATGTGATTACTGCGATGAGAATTTCGAGACACAATGGGCGAAGCAAAAACATCAGTTCAAATTTCACGGGGTCACAGTGTCCGTTTTAAAAAAGGTTACGTGCGACTTATGTGTCCGTGAATTTCCCAATAGGTACCAAGTTGGAAAGGTCCACCAGGGAAAGAACGAGAGGTCTCCCTCTTGTGGGTGGGTTGACGAACTTAAAGAAGTTGGTGGAGAAGATTGGGAGAATGCTCAAGATAGAGAGAGAGATAGAGGCCTATACTCTATAGGAGgtaATAAAGAAGAACTCGGATACCAGTTAAGTATTGAATACGAACCAAGATTTGGAGAGCCAAAGAACCGCAAAGAAGATGTTAACACAATTATCAGTAAAACTAAGTCTAATCTCAaggaaatatttacttttacaaatGCGACCCCGTTTCGAAACGTTGTAGGAACGAATTTCGTATGTCATCTATGTTCTATAGAATACACAGATTCAGGCGAATTAAAAAAGCACACGTTGGAAGATCACATTCGACATTCTGATACTGAACAATTCGATGAGGTCATCAATGAAATATTCAACGGAAAATTTATTCCCACCATAAAGCTGGACATTACTTCTTTAACTTGCAAATGCGATGCCACTATTAACAGCTTAGAAGACCTGTTCCAACATTTAATAGAAGAACATAAGCGCGTTATAAACAcaggtataaaaaatattctaattccTTTCAAATTCGAAACGGAGCAATGGAGATGCTGCGTGTGTGTTAGGGAATTCGGTACATTTAAAACGTTATTGGAACATATGAACAGCCATATCAGTAACTATATGTGCGAATTATGTAATTCAACATTCATCACGCAGGAAAGACTGAAAATTCATATGAAGTTCAGCCACGAGTTGGGAACGTTCAAATGCAATTTCTGTCCAAAAGTTTTTAGcacaaaactaaaagtctATTACCACGAGAGGGGAGTACACACGAAGaagaacaaaataaagaacTGTGAGCACTGCGATGAGCAATTTGAGACGCTCTGGGAGAGACAGAAGCACCAATTCAAAGAGCACGGCATTGCTGTACCAAAGCTGACGAAAGTTAAATGCAACATTTGCGGCCGTGAATTTTCCGACCAGAGCGCTAATAATTTACACTTTAGAAGATGCCATCTGTTGGAGAAGAACCATAAgtgccaatattgcgatatgAGGTTCTTTGACACGTCCAGTCTACGAAAACACGTTTATAAGCACACGGGGGAGAAGAATTTCCACTGCCAGGTGTGTTCGAAGTCGTTTTCGTTGAAGAATACGTTGACGGAACATATGCGAATTCACGATAACGATAGACGATACAAATGTGAGCACTGTGGTCAGACGTTCGTGCAACGGTGCAGTTGGCGTGGCCATATGCGGACAAAACATGGTCATCATATTTga
- Protein Sequence
- MDAVSPIHGQFGLLPYGVAHVSAIDGRPRMTSIWPGRMDLLHSDSWTYRLKEDTDIPKKIDIDIETEESEADIKRLLTNNTKDNFKEIIICTNASPIRSKVGREYLCCFCTDRFKDPAKLKEHSRKHLSRLDKNQCSERILKQVIDGKNRMPFIKLDITNLTCKLCGMLIKTLEELLKHLVEIHKRIMHVNIKNLIIPFKFETHEMVCCICCKEFASFKCLVEHMNTHTTNFVCDLCSATFIAMDRLKSHIKLRHALGEFKCNFCPKIFNMKVKLYQHERRMHRKANEVKKCDYCDENFETQWAKQKHQFKFHGVTVSVLKKVTCDLCVREFPNRYQVGKVHQGKNERSPSCGWVDELKEVGGEDWENAQDRERDRGLYSIGGNKEELGYQLSIEYEPRFGEPKNRKEDVNTIISKTKSNLKEIFTFTNATPFRNVVGTNFVCHLCSIEYTDSGELKKHTLEDHIRHSDTEQFDEVINEIFNGKFIPTIKLDITSLTCKCDATINSLEDLFQHLIEEHKRVINTGIKNILIPFKFETEQWRCCVCVREFGTFKTLLEHMNSHISNYMCELCNSTFITQERLKIHMKFSHELGTFKCNFCPKVFSTKLKVYYHERGVHTKKNKIKNCEHCDEQFETLWERQKHQFKEHGIAVPKLTKVKCNICGREFSDQSANNLHFRRCHLLEKNHKCQYCDMRFFDTSSLRKHVYKHTGEKNFHCQVCSKSFSLKNTLTEHMRIHDNDRRYKCEHCGQTFVQRCSWRGHMRTKHGHHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206793;
- 90% Identity
- -
- 80% Identity
- -