Pmel008976.1
Basic Information
- Insect
- Pieris melete
- Gene Symbol
- -
- Assembly
- GCA_963693345.1
- Location
- CAVNZK010000038.1:351045-360741[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.013 1.3 10.3 0.0 3 23 112 132 110 132 0.97 2 15 0.003 0.3 12.3 2.1 1 23 219 241 219 241 0.99 3 15 4e-05 0.004 18.2 1.1 1 23 247 270 247 270 0.97 4 15 0.38 38 5.7 3.9 1 23 275 298 275 298 0.93 5 15 7.8e-07 7.8e-05 23.6 0.3 2 23 453 474 452 474 0.98 6 15 0.0002 0.02 16.0 1.5 1 23 480 502 480 502 0.98 7 15 0.64 64 5.0 9.7 1 23 551 573 551 573 0.96 8 15 0.041 4.1 8.8 0.3 1 23 580 602 580 602 0.95 9 15 0.0038 0.38 12.0 2.7 1 23 608 630 608 630 0.98 10 15 9e-05 0.009 17.1 2.0 1 23 636 658 636 658 0.97 11 15 0.00061 0.061 14.5 2.9 1 23 667 689 667 689 0.99 12 15 0.0001 0.01 16.9 0.6 2 23 735 756 735 756 0.97 13 15 0.0052 0.52 11.6 3.2 1 23 773 795 773 795 0.96 14 15 2e-06 0.0002 22.3 0.7 1 23 801 823 801 823 0.98 15 15 4.1e-05 0.0041 18.2 5.2 1 23 829 852 829 852 0.98
Sequence Information
- Coding Sequence
- ATGGTGGAACCAGCAGTTTCTGATGTGGATCCCTTGGGAGCCTTTTCTTACCTGTCTCATTACCACTATGGTCAGTTTCCAAACACAATTAACCCAACATATCAGTTTGCTGTTAAACCAGAAGAATTCTACACATTACCTCCAAGCAGTACTTCTAATAACACCAACTATGAAAATACAACTCCCACAGCTCATATACAAAGTGAGAAACAACAAGATCCAAGTGTAAACTTtgatataaaaccttttttaaaaacaaatggtaaagttaaaaaagagaaaaagagTTTTATTTCTCAAAAGATTACACAAGAAGGATATCCATTCTATGGCTGTGCTGTTTGTAATATAAGTTTTCCGACACTTAGAGAATTAGATTCACATGTTGCAACACACAAGGGTAGAACAACAAGTTATGATTTAAGAGTGAAGAATGCATTGAAAAAGAAAAGATTAAAAAAGGAACAGAAGAAgttaaagaaaatgaaaaaggAGACAGTGCCTGATATTGATATAAAACCTGAAGATGGTTATATTGGTAACGAGAAAGCGACAGAATTTGGTTTGAACAACAATGATgtgaaaaacaaaagtaatcCGGAAGAACTAAAACCCCAAGAAAAGGCAACAGAATCCACAAATTTAGAAaagatttataaatgtttcGCCTGTCAGAAACAgtttatattaagttattatttgaaGTTACATGTTAGATCACATACAGATGAAAAGCCATACACCTGTGAACAATGTGGGCAATCCTTTATAACGGCTAGCAAGCTTGGACGACATAATAAGAGATTTCATTTATCTGTCCAATATCAGTGCAGAATTTGTTATAGAAAGTTTTACAGATTTGAAATCCTAACGCgacattttgataaaaaacacGCTGAAGACAAATTAGAAGGTGAACCATATGACTTCAATGCAATATTACCATACTTAAAGGAATTAGAAGAACAACTACGCGAAAAACAAGAAATGGAGAAAACTAAGTCGAAAGATGATTTATGGTCTAACGAATGGCCAAGTCCGACAATAGAAAACGAGAAAGAAGATATTAAAGAGAGTAAAAAAGAAGTAGAAGATAGAAATTTAGAAATAGAAGTTGTTAAAGTGCCTATGGATGATGTTGAAATTAAAGAAGAAATTGAGGATGttgattataattatgatGATGCGGTTAATGATAATGGAATTAATGGTGATACAAATAATGATGTGAATGAGGCTAATGATAATGATAGAGACGACGCAAGTGTAAATAATGACGATTCAGACGAGGATTATTTCCCATCAAACACATGGTTGAAACCAGAGGAGCCATTAGAGATAACAACGAACGGCGTCAAGTGTCCCGTATGCGATAAAAGTCTCAGTACGGCGTCGTACATGCGCGTGCACATGCGTACGCACACGGGCGAACGTCCGTTCAAATGCTATATATGTGATATGGGGTTTATAACGGCGAGCAAGATGCACAGGCACGTTTTGACACATCCGGAATCGTTGAAAGATGAAGTCAAATCGGAAAATGATGCGAAAAATGAAAAGGATGATGAGGATAAgGAGAAAGTGAAAAAGGCTGTCAAGAAATTATCGAAGAAAATCAACGACAAGTCGAAGAAATATCGGAAGAGGCCGCACGCGTGTGAATATTGTCACAAGAGATTTTTGCATCTTCATACATTACAGatCCATAAAAAATCCCATGAAGGcgaagaaattaaatatagatgcCACTACTGTCTTCTAGAAGTAGAGGATGAAGAGAATCTGAAGGTGCACGAAGGGAGCCATACAGGACCAAAGCCCTACCAATGTACTATATGTGATAAGTTGTATAAAAAGAGAGAGAGTATGctttATCATAGAAAAAATCACAAGCCCGAACGGGAATTCATATGCGATATATGTACGAAATCTTTTAACGCACAGTGCAAACTGCAAAGGCATATAATAAGTCATAGTGTGGACAAATATATGTTGAAGTACGAGTGTCCTGTGTGTGCGCAtatgtttaatacaaaatatcatgTACAGATGCATTTGTCCACACATCAAAGGGAGGGAGTgaTACAAGAGGAAAATCGCAACGAAATCCTTGCTATGGTCTTACAAAACGCGCGTAGAATTCCCCGCAAGGGCGAGACCCACAACTTGACTGACGTCATACCGTCGGACGAACGAAGCCGCGTGTGCAACATATGCGGCGAGGTGTTCCAGCACTTCTATTACCTCGAGGAACACCTCAAATCCCACGGCTCCAAGATCGCGATAGAGAACATCGACAAAGAGGAGGagaagaaatatatttgtgaaGTTTGTAATAAAGGTTTTAAATtgcattattatttgaaattgcATAGCTTTACCCACACGAAGGAGAAACCGTTCATTTGCCAGCAGTGCGGGAAGGGCTTCATCACCAGGGGCAAGCTGAAGAGGCATTTGGAGACCCATACGGGTCTAAAGAAATACCAATGCCATATTTGTTGTAAGTTTTTTACCCGGCCTAGTTATTTGAGGGTTCACGTGAGGACTATACATGGTGCTCAGTTGGTGAGGTTGGGGCTTAGGACGTAA
- Protein Sequence
- MVEPAVSDVDPLGAFSYLSHYHYGQFPNTINPTYQFAVKPEEFYTLPPSSTSNNTNYENTTPTAHIQSEKQQDPSVNFDIKPFLKTNGKVKKEKKSFISQKITQEGYPFYGCAVCNISFPTLRELDSHVATHKGRTTSYDLRVKNALKKKRLKKEQKKLKKMKKETVPDIDIKPEDGYIGNEKATEFGLNNNDVKNKSNPEELKPQEKATESTNLEKIYKCFACQKQFILSYYLKLHVRSHTDEKPYTCEQCGQSFITASKLGRHNKRFHLSVQYQCRICYRKFYRFEILTRHFDKKHAEDKLEGEPYDFNAILPYLKELEEQLREKQEMEKTKSKDDLWSNEWPSPTIENEKEDIKESKKEVEDRNLEIEVVKVPMDDVEIKEEIEDVDYNYDDAVNDNGINGDTNNDVNEANDNDRDDASVNNDDSDEDYFPSNTWLKPEEPLEITTNGVKCPVCDKSLSTASYMRVHMRTHTGERPFKCYICDMGFITASKMHRHVLTHPESLKDEVKSENDAKNEKDDEDKEKVKKAVKKLSKKINDKSKKYRKRPHACEYCHKRFLHLHTLQIHKKSHEGEEIKYRCHYCLLEVEDEENLKVHEGSHTGPKPYQCTICDKLYKKRESMLYHRKNHKPEREFICDICTKSFNAQCKLQRHIISHSVDKYMLKYECPVCAHMFNTKYHVQMHLSTHQREGVIQEENRNEILAMVLQNARRIPRKGETHNLTDVIPSDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIENIDKEEEKKYICEVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICCKFFTRPSYLRVHVRTIHGAQLVRLGLRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205912;
- 90% Identity
- iTF_01205912;
- 80% Identity
- -