Pmel000078.2
Basic Information
- Insect
- Pieris melete
- Gene Symbol
- clz9_1
- Assembly
- GCA_963693345.1
- Location
- CAVNZK010000001.1:865432-870599[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-08 2.1e-05 24.8 0.0 6 38 20 52 18 57 0.88 2 2 4.1 5.1e+03 -2.0 0.0 21 29 277 285 277 286 0.82
Sequence Information
- Coding Sequence
- ATGGTTCGAACATTTAAACGCAAAACGAAGAGAATTTCCATCGATGAAATTTCTGTGGCATCTGCGATATCCGACGTGTTGGAAGGAAAATTATCAATAAGAAAAGCAGccgataaatataatttaaaacctgCAACTCTACAGCATAGAATagaaaaaaagaagaataaagaCGGCGAAGGCATGAGTTTTTCTTCTAAGTATACCTCGCAGCAAGTATTTACAACCGAACAAGAAGACCAACTAAAtgcttatataataaaatgcagTCAAATGCATCATGGGCTTACATTAACTAAAGTGCGGCAGCTTGCTTACGAATAcgcaaaaaaattgaattgcaGCTATCCACCATCTTGGGATGTCAATAAGAGCACTGGCTTAGATTGGACCTATGGTTTTCCGGAGAGAGGCGAGTTGGTGACATTCGGAGGAATAATTACTGGAACTGGCAATAGAATTCCACCTGTATATGTGTTTCCCAGGGTTCATTACAAAAGCCATTTTTTAAATGGTGCTCCTGAAGGGTCTTTGGGCTTATCGTCTAGATCTGGTTGGATAAATagtgaattatttatagaggTCCTTAAACATATccaaaaacacacaaatagCACAAAGGAAAGACCGATTCTTCTTATTTGTGACAGTCATGAGTCACATATTTCAGTCAGAGCAGTTAATTATTCACGAGAAAATGGAATTGTTTACTTATCGTTTCCTCCACACACATCCCACAAGCTCCAACCTCTTGATGTCGGTGTTTTCGGtccgtttaaaacaaaactcaAAGTAGCCTTCAATGAGTGGCACATTAATAACCCTGGGAAAGCGTTAACTATTTATGATATACCAAGTCTTTCTAAGTTGGCTTTCTTTGACTCTTTCAACGAGAAAAATATAACGAGCGCATTTGCTAAGCCTGGAATCGTGCCATTTAATAGATTGGCTATTTCTCCTTGTGACGTTTATAGAAACCAAGAATCACAAAATAATCTTACAAATGATCCTATTGACCCCGAATTAACGATAGAACGCGAGCAATGTGTAACGCCACCCCCTACTAGAGAGCTACAAAATATCGTGAATCATTTTGAGTTACATAATATGCCTTCCACGTCAAGAGCTTCTGAtgtaatcaataaaacaattataaccAAATTATCCATAACTCCTGAAATTGTAAGGCCTTACCCAAAAATCTACCGAAACAATCCAACCAGAAAAGGAAAGGAATCTTACTCTTCACACTCTTCTGCTAATATGGCATTACAGGAATCATTTGATTCTGAAGGATCAACAATGACATCATATTCTGATGATGACATTATTACTGCACCACCTGTAGCAAATGATATTCATGATGGTGACTATGTTGTAACAAAGGAATCATTTGATTCTGAAGGATCAACAATGACATCATATTCTGATGATGACATTATTACTGCACCACCTGTAGCAAATGATATTCATGATGGTGACTATGTTGTAACAAAGGTAATTAACGCAGGCAAGAACCAACCTTTTAACCATTTTGTCGGAAAAATAGTGTCAAGATACCCAGATAGCCTAAGCGACTTTCCAGTCTCTTTTTTAAAGCTTAAACCGACTGGAACGTTTGTGTTCCCTGATATAAAAGACGAAGCTTCAGttaatatttctgttattgTGCTGAAGTGA
- Protein Sequence
- MVRTFKRKTKRISIDEISVASAISDVLEGKLSIRKAADKYNLKPATLQHRIEKKKNKDGEGMSFSSKYTSQQVFTTEQEDQLNAYIIKCSQMHHGLTLTKVRQLAYEYAKKLNCSYPPSWDVNKSTGLDWTYGFPERGELVTFGGIITGTGNRIPPVYVFPRVHYKSHFLNGAPEGSLGLSSRSGWINSELFIEVLKHIQKHTNSTKERPILLICDSHESHISVRAVNYSRENGIVYLSFPPHTSHKLQPLDVGVFGPFKTKLKVAFNEWHINNPGKALTIYDIPSLSKLAFFDSFNEKNITSAFAKPGIVPFNRLAISPCDVYRNQESQNNLTNDPIDPELTIEREQCVTPPPTRELQNIVNHFELHNMPSTSRASDVINKTIITKLSITPEIVRPYPKIYRNNPTRKGKESYSSHSSANMALQESFDSEGSTMTSYSDDDIITAPPVANDIHDGDYVVTKESFDSEGSTMTSYSDDDIITAPPVANDIHDGDYVVTKVINAGKNQPFNHFVGKIVSRYPDSLSDFPVSFLKLKPTGTFVFPDIKDEASVNISVIVLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -