Basic Information

Insect: Pieris mannii
Gene Symbol: -
Assembly: GCA_029001895.1
Location: CM054848.1:2730704-2740738[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.037 3.2 9.0 0.3 1 23 344 366 344 366 0.98

2 10 0.0062 0.53 11.4 8.4 1 23 373 395 373 396 0.94

3 10 0.16 13 7.0 1.9 1 23 400 422 400 422 0.97

4 10 0.052 4.4 8.5 1.8 1 23 427 450 427 450 0.97

5 10 0.035 3 9.1 0.2 1 23 454 477 454 477 0.93

6 10 0.021 1.7 9.8 0.1 3 21 491 509 490 514 0.93

7 10 0.32 28 6.0 0.4 2 23 556 578 555 578 0.95

8 10 0.0079 0.67 11.1 0.7 2 20 594 612 593 615 0.91

9 10 3.2e-05 0.0027 18.6 0.2 1 23 621 643 621 643 0.97

10 10 0.00059 0.05 14.7 5.6 1 20 650 669 650 671 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.037	3.2	9.0	0.3	1	23	344	366	344	366	0.98
2	10	0.0062	0.53	11.4	8.4	1	23	373	395	373	396	0.94
3	10	0.16	13	7.0	1.9	1	23	400	422	400	422	0.97
4	10	0.052	4.4	8.5	1.8	1	23	427	450	427	450	0.97
5	10	0.035	3	9.1	0.2	1	23	454	477	454	477	0.93
6	10	0.021	1.7	9.8	0.1	3	21	491	509	490	514	0.93
7	10	0.32	28	6.0	0.4	2	23	556	578	555	578	0.95
8	10	0.0079	0.67	11.1	0.7	2	20	594	612	593	615	0.91
9	10	3.2e-05	0.0027	18.6	0.2	1	23	621	643	621	643	0.97
10	10	0.00059	0.05	14.7	5.6	1	20	650	669	650	671	0.96

Sequence Information

Coding Sequence: ATGAGGTGCTGCGTAAAATCCTGCAAAAATGATTCGAGAACTAGCTCCAAATCACACGGCATTACATTTCATGTgtTTCCAACTGATTCAAAACTGCGCCAAGCCTGGTTAAAAGCAATAGGGAAGGAATCATGGTCACCAAGAGAACGTAGTGCTGTCTGTTCAGACCACTTCATGattgaagatatttttgttaccAAAAGTGGTTTAAGGAAAGTGAGGAATGGTGCGGTACCAATTTCTGATAGTAGTGTTTGCAGTTACAATGAAAATACTGTTAATCTTTTGgtGTGTAGAATATGTCTCGGTTCAGATGTGAAGTTATTACCTATTGGAAAATTTAGTTTGGAACAAACATATGAACATGTAACAGGACATACTATGACAAAAGGTGATAATTTACCTCaatacatttgttttgaatgtGCACAGAGACTGACAAActgtcatatatttaaagcAAAGTGCTTGAAATCTAGGAGGCTTCTATTGGATTTGATATCTGATGATAGTAACaTTAGTATAGATAGCATTAAATCAATAGACAGGCAAACACATAAACTAACATCAGACTTGTGCATTACAATTTTGGATCCAGATAAAATAGTGAATCTAGAATATGTcgaaaatacaaataacattgaaattgaaaaaataccGGAGCAAGATAAAAACGATATATTTGTACAAGAGTTACCGAAAGACTTTGACGACGATGTTAATGATAGAGacgattttaatgataatCAATTTAATGATGCGGATAATGTTAATGATAAAGATTATGATAAGGATTGCGACAAGGATTACTCCTCTGACGATAGTCTACCACTTGAGTTTCAAAGAAAGAAGCGTAAAAGGACGAAGAAGGTGAAAAAAGTCGACGAACCAAAGATAGATAGACGACGGAAGCCATTTTTGAATGCCGATTTAAATGAGACGCTATTCACCATCACGGACCTGACAGTGGAGGAGCAAATGGCTGAGATTGAGAAGAGGCAGGAATCGgcgaattataaaaatgcagTATTCAAATGTGGGGAGtgttttaaaggttttttGGATGAGGACGCTTATAATGGACATATGACACGACACactaatGAATGCGGCGAACACGAATGCGCAATAtgtaaaacacattttaaacatCCACACGCCCTGCGCAAGCACATCACAGCGCATCACACACAGAGATATAACTGTAATAGGTGTCCCTATGTCACTACGCATAGACAAACTGCACGGCTCCACGAACGTTGGCATAAAGGGACCAAATACCAATGTCCGCATTGTCAAGATGAATTTGTtaAATTCACAACATATATGGGACATATTCGTATAAAGCATCCTTCTGACTTCATATGTGTTCTCTGTGGTTATTCCTTCGTCAGCGAGAAAGGGATAGAATTgcataagaaattaaaacatcGATTGGATGATGGAAAGATGCCCGATGATGGGCCGCTTTGTGAGTTATGCAACGTTCGTTTTGTGTCCGCGGAGGCGTATAAGAGACATTTAAGTGTGTCCGCCAGACATACCAACGATTCAAAAGACAAATCGAGGAAAGGCCGGAAAACACGTGAGAAAATGGAGAAAAACGATATTTTTGATAGGAAGAAAAATTATCCGAGCCAGTTGAGAAAAGCTGAAGGACCTATACCCTGTGAACAGTGTGGCGTCGAGTTGGAAGACTCCCGCGCCTATCACAGTCACTTCCGACGACAGCACCCAGACAAGAATCGAACCAACTACCCCTCAATGAAGTCGCCTTGTATGTGCGAGGTTTGTGGGAGAATGTTTCAGAGTTACGCCCTTCTTAAAGATCACCGCTGGGTACATACAGGCGAGCGTCCGTTCGCGTGTTCAATATGCGGAAAATCGTTCCGTATGAAGCAACGTCTAGTCGCCCATGGGCGCGTGCACAGCGAACTGAGAGCGTCCTACACTTGTGCCATGTGCGGGAAGAGCTTCTCGACCCATAGTAATTGTCAGCGGCATATGTTTCACGTTGAAGAAACCGGCTCGCCtcagactcaaaaagtcgacggcgtgtgtcaggcactggaggccgATCACGTACGTCATTCGCCAGGGTGGTCGTATACAACGGATTTTTGCCCGATCCTAACATACATGTGGCGACCAATTCATACCACTCCTCTTCACCACGTGTGA
Protein Sequence: MRCCVKSCKNDSRTSSKSHGITFHVFPTDSKLRQAWLKAIGKESWSPRERSAVCSDHFMIEDIFVTKSGLRKVRNGAVPISDSSVCSYNENTVNLLVCRICLGSDVKLLPIGKFSLEQTYEHVTGHTMTKGDNLPQYICFECAQRLTNCHIFKAKCLKSRRLLLDLISDDSNISIDSIKSIDRQTHKLTSDLCITILDPDKIVNLEYVENTNNIEIEKIPEQDKNDIFVQELPKDFDDDVNDRDDFNDNQFNDADNVNDKDYDKDCDKDYSSDDSLPLEFQRKKRKRTKKVKKVDEPKIDRRRKPFLNADLNETLFTITDLTVEEQMAEIEKRQESANYKNAVFKCGECFKGFLDEDAYNGHMTRHTNECGEHECAICKTHFKHPHALRKHITAHHTQRYNCNRCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFICVLCGYSFVSEKGIELHKKLKHRLDDGKMPDDGPLCELCNVRFVSAEAYKRHLSVSARHTNDSKDKSRKGRKTREKMEKNDIFDRKKNYPSQLRKAEGPIPCEQCGVELEDSRAYHSHFRRQHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHRWVHTGERPFACSICGKSFRMKQRLVAHGRVHSELRASYTCAMCGKSFSTHSNCQRHMFHVEETGSPQTQKVDGVCQALEADHVRHSPGWSYTTDFCPILTYMWRPIHTTPLHHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01206897;
90% Identity: iTF_01205764;
80% Identity: iTF_01204105;