Pman017420.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pieris mannii
Gene Symbol
-
Assembly
GCA_029001895.1
Location
CM054845.1:5196317-5207704[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 9.2e-05 0.0078 17.2 0.1 3 23 129 149 128 149 0.97
2 17 8.4e-07 7.1e-05 23.6 1.2 1 23 155 177 155 177 0.99
3 17 5.2e-06 0.00044 21.1 2.7 1 23 183 205 183 205 0.99
4 17 3.6e-06 0.0003 21.6 2.6 1 23 220 242 220 242 0.98
5 17 4.8e-05 0.004 18.1 3.1 1 23 257 279 257 279 0.98
6 17 3.3e-07 2.8e-05 24.9 1.5 1 23 294 316 294 316 0.99
7 17 0.00024 0.02 15.9 0.0 1 23 361 383 361 383 0.97
8 17 5.1e-06 0.00043 21.2 2.0 1 23 389 411 389 411 0.99
9 17 0.034 2.9 9.1 1.8 1 23 418 440 418 440 0.98
10 17 5.6e-07 4.8e-05 24.2 2.3 1 23 446 468 446 468 0.99
11 17 0.039 3.3 8.9 1.8 1 23 475 497 475 497 0.98
12 17 2.3e-06 0.00019 22.3 1.5 1 23 503 525 503 525 0.99
13 17 0.00044 0.037 15.1 0.7 1 23 532 554 532 554 0.99
14 17 2.5e-06 0.00021 22.1 1.9 1 23 560 582 560 582 0.98
15 17 0.0019 0.16 13.1 0.3 1 20 588 607 588 610 0.93
16 17 2.5e-05 0.0022 19.0 1.3 2 23 617 638 616 638 0.97
17 17 3.3e-06 0.00028 21.8 1.4 1 23 644 667 644 667 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATTAAAGCTGAGCCTATGAGTTTCTACACATCACATTCACATATAAACAACGGTCCGCCTACAATAGTCCGTTCAGATTCACATAGCCTCATTATGAACCAGCACCTTCCCCAAGAGGACTCCAAAGACAGCCTCATACAACACCAAGTACACCAACAGGAGCTGCTGGAACAGCACCAACAGGATATGCAACATGAACAGGATGATGATGTTGATAATTTAAGTTTCAAAGGTATGGACGATGAAGGTGTTGAAATGGACATGGACGGACGGCAATGTTCTCAGGGTATGGGTGTCGATATGGGATCGGTTCAGACGAAAATGGACGTTTCTAACGGTCAAGGTGTACCACGATCTAAACCGCAAGCTTGTAAGGTTTGCGGCAAAGTGTTGTCATCGGCGTCTTCGTATTATGTCCACATGAAACTACACTCTGGCAACAAACCTTTTCAGTGCacgGTATGTGACGCAGCGTTCTGCCGCAAACCATATTTAGAAGTGCACATGCGCACGCACACAGGAGAAAGACCTTTCCAATGCGATCTATGTCTCAAGAGATTCACGCAGAAGTCCAGTCTCAATACGCACAAACGTGTACACACcgATGAGCACCTTCGCGCATTGATGGTGAAGGAGCGGCCCTACAAGTGTGACCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTTGGCCGACATGGAAAGATACACACGGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGCTTCACTCAGAAGTCCAGCCTGGGCACTCATAAACGTATACACACCGTAATTGTCTTTGATAACGCGTCGGAGATTGGCTGGGGGCCGCCGAATCAAGGCACGCGAGCCGTATTGCGTCGGCGACGTGCGTTACTCGCTTTTGTGTGTGCACTGGGCGCAGTGCAAGGGCGTCCATTCGCGTGCGGGCTTTGCCCGGCGGCGTTCGCCCGTCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATCCATAGACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCGGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGGACGCACACGGGTGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCGAGTCTCAACATTCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGTCTGCAGTGTCCTGCGGCCTTCACTTGCAAGCAGTATCTGGAGATCCACAATCGCACGCACACGGGCGAGCGGCCCTACCAGTGCGACGTATGCCTCAAGAGATTCGCGCAAAAGTCTACGCTGAACATACACAAAAGAACGCACACGGTGCAAGGGCGGCCGTATCAGTGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCCTACCTGGAAATACACATGCGCACGCACACAGGCGAGCGGCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCTACCCTCAACATTCACAAGCGCATTCATACCGgGGAACGACCCTACGCATGTGATATATGTCAGAAAAGATTCGCTGTGAAGAGTTATGTTACGGCTCACAGgtgGTCGCACGTAGCGGACAAGCCGCTGAGTTGCGAGCGTTGTTCAATGACTTTCACGTCCAAGTCTCAATTCGCGTTGCACATTCGTACGCACGCGGCCGGACCTTGCTACGAGTGTAGCGTGTGCGGACGCACGTTTGTACGGGACAGCTATCTTATACGtcATCACAATCGCGTGCACCGCGACAGCCACAGTAATATGTCTGCTAATAGTGGCGTTATAAGCAACGCTGGTGGGGCTGGGAATTCAGGCAACTATGACTCTCCTGGCGTCTGCGATTTgagCTTCGTACCTATGGTGAACCGTTATCTGACGTCACAAGGAACGCAAGTGTCGCTTGACGGCACCACCAAGATGTCAGCCATGTCACCACAGTCCATCGCTTCTATTTCGTCCCCCCCTCCGTCGCACACGCCTACCCCCCAGCCGCAACAGATGACGTCAGGGATGCGACTATCGGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHSHINNGPPTIVRSDSHSLIMNQHLPQEDSKDSLIQHQVHQQELLEQHQQDMQHEQDDDVDNLSFKGMDDEGVEMDMDGRQCSQGMGVDMGSVQTKMDVSNGQGVPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLRALMVKERPYKCDLCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTVIVFDNASEIGWGPPNQGTRAVLRRRRALLAFVCALGAVQGRPFACGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLSCERCSMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRHHNRVHRDSHSNMSANSGVISNAGGAGNSGNYDSPGVCDLSFVPMVNRYLTSQGTQVSLDGTTKMSAMSPQSIASISSPPPSHTPTPQPQQMTSGMRLSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_00430838;
80% Identity
-