Basic Information

Insect: Pieris macdunnoughii
Gene Symbol: -
Assembly: GCA_905332375.1
Location: CAJOBZ010000007.1:7121435-7123866[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.1e-05 0.00068 19.8 0.3 3 23 290 310 289 310 0.96

2 5 9.4e-06 0.00058 20.1 0.4 1 23 316 338 316 338 0.98

3 5 0.0005 0.031 14.7 0.5 1 23 344 366 344 366 0.98

4 5 0.0005 0.031 14.6 2.6 1 23 375 397 375 397 0.98

5 5 0.00046 0.028 14.8 0.3 1 21 402 422 402 423 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.1e-05	0.00068	19.8	0.3	3	23	290	310	289	310	0.96
2	5	9.4e-06	0.00058	20.1	0.4	1	23	316	338	316	338	0.98
3	5	0.0005	0.031	14.7	0.5	1	23	344	366	344	366	0.98
4	5	0.0005	0.031	14.6	2.6	1	23	375	397	375	397	0.98
5	5	0.00046	0.028	14.8	0.3	1	21	402	422	402	423	0.95

Sequence Information

Coding Sequence: ATGCGAACATACAGTCGTAAAACTAAGAGGCCTGTACTTCTTGAGGGTGTTTTAGAACTGTGCCGGCTTTGTCTTAATAAAGTGACTACACCAACACCAATTTACAATGATGACGATCAATCGTACTGTTTGCCTTTACCTATGAGAATTTTGACGTGCCTTGGTTTCGAGATAACTAAAGATGAGGGTTTACCTAATATCATATGCTCACAGTGCCTTGAAGACTTAAACaaattctataattttaaaaagaaatgtatacttgcatataaaaagttaaaatccCATTACTTGGCTGTGAAACAGAAGGAAAATCCAAAAATTGAATATGAAGAACTTTTAGGATCTTGTAATCTTGAATCTGATATTATATCAAATGAAGAGGTACAGAATAGCTTTGATGAAAATGAAATTGTCTTGTCTTTGACAGAGGAAGATTCTCTtgaagtaattaatatatttaaaactgaaGAACAACTAACGGAGCAGGTTGAAAAGGATGAAGAAGTGCAAATTGATACAACTCAGAACAACAATGATAgcctaaattttttaaattcaactcCAGCGCCGTCTATTCCATTTGTTCCGGAGGATGTATCAAACTTCTTATCAACAATTCTACTACAATTGGGTGTACTCACTAAAGATAATGACCAAATAGCTGTTGTCAATCAAACATTCAAAAATGTACAACTTGACACAAATGATGGCTCTGTAACATTGGAACTTGTGGAAGAAGACGAGgaTCCGCAATTGATACAAACTCATCTTAAACAAGAACCcaaaaaagataatattaaaaatggctccgttaattatgtatatgatGCAAATAAGGGTTTAGTCCCCatGGGTAAGGAAATTTGCAGTACTTGTGGCAAAAGGTATTCAACGCGGGCTGCGTTGGCTCGGCACCAATATATTCACTCAGGCGTTCGCCCCTTCACCTGTGAAGTGTGCAACCGAGCATTCAACCAGCGGGATATACTCAGACGACATATGCTAGTTCACGAACAAGAGCGGCCATTCCAATGTCGGTCGTGTGCGAGAGGATTCACTCAGCGTGCTGCTTTACGTTCGCACGAACTGACTCACATGCCTGGCCGACTCATGTCCTTACACCGGTGTCAACTTTGTCCAAAGATGTTCCTACACGCTTCAGgtCTAAGTCGTCATCAAGCCACGCACGCAAATCGAACGTACGCGTGTGACTCGTGTTCGCGACCATTTAACGATTCGAGCTCGCGTAACCGGCACATGAAGATTTGTAAAAAGAGGCCACGTTCATAG
Protein Sequence: MRTYSRKTKRPVLLEGVLELCRLCLNKVTTPTPIYNDDDQSYCLPLPMRILTCLGFEITKDEGLPNIICSQCLEDLNKFYNFKKKCILAYKKLKSHYLAVKQKENPKIEYEELLGSCNLESDIISNEEVQNSFDENEIVLSLTEEDSLEVINIFKTEEQLTEQVEKDEEVQIDTTQNNNDSLNFLNSTPAPSIPFVPEDVSNFLSTILLQLGVLTKDNDQIAVVNQTFKNVQLDTNDGSVTLELVEEDEDPQLIQTHLKQEPKKDNIKNGSVNYVYDANKGLVPMGKEICSTCGKRYSTRAALARHQYIHSGVRPFTCEVCNRAFNQRDILRRHMLVHEQERPFQCRSCARGFTQRAALRSHELTHMPGRLMSLHRCQLCPKMFLHASGLSRHQATHANRTYACDSCSRPFNDSSSRNRHMKICKKRPRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01205261;
90% Identity: iTF_01206911;
80% Identity: -