Basic Information

Insect: Pieris macdunnoughii
Gene Symbol: -
Assembly: GCA_905332375.1
Location: CAJOBZ010000047.1:600535-609051[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.056 3.5 8.2 8.4 1 23 266 288 266 288 0.98

2 10 0.021 1.3 9.5 3.4 2 23 296 317 295 317 0.97

3 10 0.044 2.7 8.5 3.4 1 23 351 374 351 374 0.97

4 10 2.1e-06 0.00013 22.1 3.2 1 23 378 400 378 400 0.97

5 10 0.0044 0.27 11.7 0.5 1 23 406 428 406 428 0.97

6 10 0.00094 0.058 13.8 1.7 2 21 435 454 434 459 0.93

7 10 0.0021 0.13 12.7 0.3 1 23 467 490 467 490 0.90

8 10 0.06 3.7 8.1 0.4 2 23 497 521 496 521 0.94

9 10 1.8e-06 0.00011 22.3 1.0 1 23 530 552 530 552 0.98

10 10 0.0055 0.34 11.4 0.2 1 23 558 581 558 581 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.056	3.5	8.2	8.4	1	23	266	288	266	288	0.98
2	10	0.021	1.3	9.5	3.4	2	23	296	317	295	317	0.97
3	10	0.044	2.7	8.5	3.4	1	23	351	374	351	374	0.97
4	10	2.1e-06	0.00013	22.1	3.2	1	23	378	400	378	400	0.97
5	10	0.0044	0.27	11.7	0.5	1	23	406	428	406	428	0.97
6	10	0.00094	0.058	13.8	1.7	2	21	435	454	434	459	0.93
7	10	0.0021	0.13	12.7	0.3	1	23	467	490	467	490	0.90
8	10	0.06	3.7	8.1	0.4	2	23	497	521	496	521	0.94
9	10	1.8e-06	0.00011	22.3	1.0	1	23	530	552	530	552	0.98
10	10	0.0055	0.34	11.4	0.2	1	23	558	581	558	581	0.94

Sequence Information

Coding Sequence: ATGAATGAAAACTCCGttgtaacaaatatatgtGATGGATGTTTAAGTAAAGATCGTGTCCTAACAAGTTTTAGCtatgaatttttgtatttatactCCCAACTTCTTGGAACTCCGCTTAATATGAAGACCATAAACATGTGTTGGGAATGCTGTGCTGTGTTAAGAAAGGTAGAGaggtttaaaaaacaaattaaaaaagcaCAGAACTGTATGCTAGACTTGGTGGAAAACCACTCGCTATCTAAATTAAAGCAAACTAAATGCCTCAAAATTGATTATTCAAGTCATGAAATAGAAAGCAAAGACTTTAAAACTGAAGATGAATCTCTGTATAAGTCACTAGGAATGCAAGATTTTTCAAACCACAATATtacacataatttttataacaataatggATTTAATAGCGAAACTGatttacatagaaataatGATGTAAAGTGTGAATTTTTTAGCCATAATAATTATGAGACTGAATTTGATTATGTAGATGCAGATTGTACTGATGTTTTCTACAGTGTAGATGAAAAAATTGTGAAGACTCTTGAAGAGTTTGATGAATCAGATGAGGAACCATTGCggaataaaaagataaaaacaaaggagaaaatgaagaaAGAGACCAAGAGACGAGAGAAGGCATCTGGTGTGGTGATGAATGCTCGAGTGATGAAAAAGCTTCAACAACTGAATGTTAATGGTGATCACCTTGAAATGGTGTTGCTTAGTTGGGAAGAGGTGGAAAGTGAGCGTCAAGCGACGTTGCAGAATCCAAAATTCATGCGACACGCCCACAAATGCCACCAATGTGCACTCGGATTTAACCATGCTTGTAAACTAGAAGAACATATGAAGAAACATCAACCGTGCGAGGGTAGTGTGGAATGTGACTCGTGTCATATTCAATGTAAAGACAAACAGGCGCTGGCCTCACATCGGCGAAGACATCGAGTGAgATGGCGTTGCGTTGTATGCGGCGGATGTTGGTCCCGTGCGAGCGTAGCAGCGGATCACGTCCACAGACATCACGCGGGACCGACGCCAACCCACACGTGCAATATGTGCGGACATCGGGACACGACATTAGGCAAACTACGAAATCACATCAAAAAGGCCCACTCCGGTCAGCATAAATGCGAACTTTGTGATAAAGTATTTCGGGATAAGACATCTCTCAGGAAACATTTGTTtaTCCACAGTGGTGTAAAAGAATATTCGTGTAGTGAGTGTGGGAAGCAGTTTCTATTTAAGAAGGCGATGGAAATACACCTAGTCACGCATCAGTCGCCGGCCTATATGTATTGTTATCAGTGCGACATGACGTTCAAGAATCAAATGTCATACAACCAACATATGAAGTACAACCTCAAGCATATAGATCCAGATAAGCTCAAatacgCTTGCAAATTGTGCgataaaaaatttgtaaagGCAAAGCGACTTGAAGAACACAACATGGCGGTGCATTTAAAGATAACACACATACAATGTCCCGTCACTGGGTGCACCTTTGCGTGTTCGTCCCGTGCTGTACTGAGGTCCCACCGTCGAGCGATTCACGCGCAACACGTGACGTCACGGAATCACGTGTGTGATATGTGCGGGAAGGCTTATACTacAAAGAAAAGTCTAGAAGGCCACTTGCGCATGCACAGCGGTGAGCGTCCGTTCCGTTGTACGAAATGTCCCGCTGCCTTTGGCTACGAGAGCGCCCTCTATAACCACAATAAGCTCgtacatttaaaacataagGTAAACCGTAGCCGCGCCCAGCCAAACTCAAATTGGATCGAAGTTCCTACAGATTAA
Protein Sequence: MNENSVVTNICDGCLSKDRVLTSFSYEFLYLYSQLLGTPLNMKTINMCWECCAVLRKVERFKKQIKKAQNCMLDLVENHSLSKLKQTKCLKIDYSSHEIESKDFKTEDESLYKSLGMQDFSNHNITHNFYNNNGFNSETDLHRNNDVKCEFFSHNNYETEFDYVDADCTDVFYSVDEKIVKTLEEFDESDEEPLRNKKIKTKEKMKKETKRREKASGVVMNARVMKKLQQLNVNGDHLEMVLLSWEEVESERQATLQNPKFMRHAHKCHQCALGFNHACKLEEHMKKHQPCEGSVECDSCHIQCKDKQALASHRRRHRVRWRCVVCGGCWSRASVAADHVHRHHAGPTPTHTCNMCGHRDTTLGKLRNHIKKAHSGQHKCELCDKVFRDKTSLRKHLFIHSGVKEYSCSECGKQFLFKKAMEIHLVTHQSPAYMYCYQCDMTFKNQMSYNQHMKYNLKHIDPDKLKYACKLCDKKFVKAKRLEEHNMAVHLKITHIQCPVTGCTFACSSRAVLRSHRRAIHAQHVTSRNHVCDMCGKAYTTKKSLEGHLRMHSGERPFRCTKCPAAFGYESALYNHNKLVHLKHKVNRSRAQPNSNWIEVPTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01204377;
90% Identity: iTF_01202768;
80% Identity: -