Basic Information

Insect: Pieris macdunnoughii
Gene Symbol: -
Assembly: GCA_905332375.1
Location: CAJOBZ010000053.1:949475-958278[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.079 4.8 7.7 1.0 1 23 365 387 365 387 0.98

2 10 0.018 1.1 9.7 3.7 1 23 394 416 394 416 0.95

3 10 5.9 3.6e+02 1.8 0.1 1 11 420 430 420 437 0.83

4 10 0.00045 0.028 14.8 0.6 2 23 449 471 448 471 0.96

5 10 7.9e-06 0.00049 20.3 1.5 1 23 479 501 479 501 0.97

6 10 2.8e-05 0.0017 18.6 0.5 1 23 506 528 506 528 0.99

7 10 0.0071 0.44 11.0 2.1 1 22 535 556 535 560 0.92

8 10 2.1e-05 0.0013 19.0 0.0 2 23 566 587 565 587 0.97

9 10 4.2e-05 0.0026 18.0 5.4 1 23 592 614 592 614 0.99

10 10 0.00097 0.06 13.7 1.5 2 21 624 643 624 644 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.079	4.8	7.7	1.0	1	23	365	387	365	387	0.98
2	10	0.018	1.1	9.7	3.7	1	23	394	416	394	416	0.95
3	10	5.9	3.6e+02	1.8	0.1	1	11	420	430	420	437	0.83
4	10	0.00045	0.028	14.8	0.6	2	23	449	471	448	471	0.96
5	10	7.9e-06	0.00049	20.3	1.5	1	23	479	501	479	501	0.97
6	10	2.8e-05	0.0017	18.6	0.5	1	23	506	528	506	528	0.99
7	10	0.0071	0.44	11.0	2.1	1	22	535	556	535	560	0.92
8	10	2.1e-05	0.0013	19.0	0.0	2	23	566	587	565	587	0.97
9	10	4.2e-05	0.0026	18.0	5.4	1	23	592	614	592	614	0.99
10	10	0.00097	0.06	13.7	1.5	2	21	624	643	624	644	0.94

Sequence Information

Coding Sequence: ATGTCatcatttttgtgttttttatgcCACAGTACTGTTAATGATGAGACCAATGAAGAAACACGCGAGAAATATAAGGAAGTCGTCGGTATTCATtTGTGCCCTGACTCTCACCTGTGCTATATATGTTGCCATGTCCTACATAAACTCTTCATGTTTCGTTCAATTTGTTTGAAGCGTAGCTTGGAGTATCCTGTATTATTTAGTGAAAAGGGTACAATCAATTTACACAGAAGTGATAtagaaataaacatattatgtcCAGAAGAATGTGACCAATACCAAGAAAAACAATATCATTATGACTATAATAATGATTTCAACACACACTTTAATGATAATAGATTTAATGATAACCAGTATGTTGAGTTAGAAGATGAATAtgactattttaataaaaatcaatatgaTGTTGAAAAGGTTACCGAAAACTATGactatattaatgaaaaaccAGATGAGATGCTAAATGATgaacattttcataatttcaatcaaaattttgattattttaaatataatgaagaAATACCACAGATAAATACTctacatgtaaataaaaataatgaaaacattggctttaattataatgacaatAGGACTAATGattattcaaatgtttttAGTCAAAATACCTTTGATATTCCATTAGATGATTatgaaaatcaaataaaacataatattataaatcaaacTTATGTAGAAAAGGTAAATAATGTCAATACAGaagaaaataatgatttagAAACAAATTATTCACAAAATGCCCATATAACTAATAAAGTTGTTGAGGCGGATAAAGAGAAAATTTTGGACAATGTAAACGAAATTGATCATATTATAGAACAAGATAatgattttaatgataatgaaGAAACTAATCAAATATCaaccgatgatgaaactcagagcaacatattaaatacttcTGATGATACAAAAATAGAGGAAAGTGGCGAAGTTGAGAGTTTacaggaaataaatattaaaaagaaaaagaagagaggttttaaaaagattgtttTGTCTTTAGAAGAACAAAAGAAggaattagaaaaaaatagaaaatgtaaGAAGTACACAGAAGCTGagtttaaatgttataattgtGCAATCGGCTTCTTGTTTAAGGACACATACCAGGCTCATATGATGAGGCATGAGGAGTCAAATGGCGAATTTCGTTGTCTCACATGCACGCTACGATTTTCAACTCATGCGCTACTACGGACACACAATACATCCCATTCGGACATATATGAATGTCTGAATTGCGGCCAAGTGCTAAAGCCGAGGGCAAAACGGACACACCCATGCTTCAAAACGAAATGCGAAGAAAATGTTTCGTGTCATTTGTGTGGAAATCTTTTTAGAGATGCAAACGGGTTACAGCAGCATTTGAGGCGAGTTCACGCAAAGGCATCGAACCGACTACACTCATGTACGATATGCAATGAGAATTTCACTAATCCGTCAGTCTTGAAGACACATATGATaaAACATATAAACCGAAAATTTCAATGTGAGCAGTGTCCGGCGGTTTACAAGAGCCCGTACACTCTTGCGCAGCACAAGAGGAAACACGAGGTGTTCGGTGAGAAGCACTGCTGTACACTTTGCGATGTGGTTTTTGATAGTCGGAAGAGTTTGTTAGCGCATTTTAGACGGACGGCCGCTCATCAGAATAATGTCCTAGAGTGTCCCATATGTGGCAGAGTTTGCGCAACACAACCAGCGTTAGAGGCGCACGCGCAGACGCACGCATCCGCCCAATACACGTGCACGCATTGCACTAATTCATACAGTACTAGGAAGTCGTTGATACGACATTTGCGAAGGCACACAGGCCGGGATCTGATAGCTCCCGCAGTCTGCCATTTGTGTGGAAATAGTTTTAAGGGCAAGAACAAATTAAACAGACATTTAAAACAAGTTTGCGAGAAGGCAAAATTGGAAGAACAATTAGCTTCTTTATACGAATAA
Protein Sequence: MSSFLCFLCHSTVNDETNEETREKYKEVVGIHLCPDSHLCYICCHVLHKLFMFRSICLKRSLEYPVLFSEKGTINLHRSDIEINILCPEECDQYQEKQYHYDYNNDFNTHFNDNRFNDNQYVELEDEYDYFNKNQYDVEKVTENYDYINEKPDEMLNDEHFHNFNQNFDYFKYNEEIPQINTLHVNKNNENIGFNYNDNRTNDYSNVFSQNTFDIPLDDYENQIKHNIINQTYVEKVNNVNTEENNDLETNYSQNAHITNKVVEADKEKILDNVNEIDHIIEQDNDFNDNEETNQISTDDETQSNILNTSDDTKIEESGEVESLQEINIKKKKKRGFKKIVLSLEEQKKELEKNRKCKKYTEAEFKCYNCAIGFLFKDTYQAHMMRHEESNGEFRCLTCTLRFSTHALLRTHNTSHSDIYECLNCGQVLKPRAKRTHPCFKTKCEENVSCHLCGNLFRDANGLQQHLRRVHAKASNRLHSCTICNENFTNPSVLKTHMIKHINRKFQCEQCPAVYKSPYTLAQHKRKHEVFGEKHCCTLCDVVFDSRKSLLAHFRRTAAHQNNVLECPICGRVCATQPALEAHAQTHASAQYTCTHCTNSYSTRKSLIRHLRRHTGRDLIAPAVCHLCGNSFKGKNKLNRHLKQVCEKAKLEEQLASLYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01202745;
90% Identity: iTF_01202745;
80% Identity: -