Basic Information

Insect: Pieris macdunnoughii
Gene Symbol: -
Assembly: GCA_905332375.1
Location: CAJOBZ010000031.1:711126-714698[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0002 0.012 15.9 0.0 3 23 209 230 207 230 0.93

2 10 0.093 5.7 7.5 0.1 2 23 254 276 253 276 0.91

3 10 0.0035 0.21 12.0 3.5 1 23 298 320 298 320 0.98

4 10 0.051 3.1 8.3 4.4 5 23 327 345 324 345 0.96

5 10 0.00012 0.0074 16.6 2.8 1 23 350 373 350 373 0.98

6 10 0.0012 0.074 13.4 0.6 3 23 382 403 381 403 0.94

7 10 6.6e-06 0.00041 20.6 2.2 1 23 409 432 409 432 0.98

8 10 0.0017 0.11 13.0 5.3 1 23 438 460 438 460 0.97

9 10 2.6e-07 1.6e-05 25.0 1.1 1 23 466 488 466 488 0.99

10 10 9.4e-05 0.0058 16.9 3.9 1 23 494 516 494 517 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0002	0.012	15.9	0.0	3	23	209	230	207	230	0.93
2	10	0.093	5.7	7.5	0.1	2	23	254	276	253	276	0.91
3	10	0.0035	0.21	12.0	3.5	1	23	298	320	298	320	0.98
4	10	0.051	3.1	8.3	4.4	5	23	327	345	324	345	0.96
5	10	0.00012	0.0074	16.6	2.8	1	23	350	373	350	373	0.98
6	10	0.0012	0.074	13.4	0.6	3	23	382	403	381	403	0.94
7	10	6.6e-06	0.00041	20.6	2.2	1	23	409	432	409	432	0.98
8	10	0.0017	0.11	13.0	5.3	1	23	438	460	438	460	0.97
9	10	2.6e-07	1.6e-05	25.0	1.1	1	23	466	488	466	488	0.99
10	10	9.4e-05	0.0058	16.9	3.9	1	23	494	516	494	517	0.96

Sequence Information

Coding Sequence: atgacaTTACCAACTATATGCCGTTGCTGTTTGGCTAAAGGATTGCACACAGACATGGAGATCCCAAATATATATGaaggaaaaaaagaaatttattttgaaatgctCCAGGAGTGCTTCAACATTGATCTATCTACCCAGAAGAAATCAAAGTCAATATGCAACAAATGTATAACACGGTTAAGAGATGCCCATGATTTTATGCAGCAAGTTCTCTATACTGAGGAGATTATTACCACAATCTTAGAGGAAAATAatggtaatatattttttatttCtgtggatgaatgtgaagagTTAAAATCAGAAGATGATTCAACAGATGGcctttatttgaatattgATGATGTGTCAATTGAGGTAAAATCAGATAATTGTGACAATTCGGATAACAGTGACAATGtGGAAGAGAAAGAGTCGAAAGCAAAAGAAGTGATTAAGTCAAGTGGGGCTAAGAGGAAACCATCTACCAAGAAATCAAGTAGAAAATCAAGGAgTGAAAAGAAAGTATCAAAATTAACAAGGCCACTACACGAGAAAgacaaacaaaagaaaaatctgacaacacttttaaaatattcaaatatactGGTGTTTAAGGACAGAACACTGGCTGGGATTATTTGTGGATACTGTGATAAAGTCTTTGAAGATCCGTTGGAACTCAGATCCCATACGGACTCAGACCATGCAAGTGAACGACTCTTCATTCCATTGGACTACAAGAAGTACCCAATCAAACTAGAGATCTCAAACCTAAAATGCACGATATGTGACGAAGACATTGACAATTTACAAACCCTCAAAGAACATTTAGTGAATAGACATGACAAATTCATCTATAATGACATAAAGGACTATTTAATGTCATTCAAATTCACAAGTGACAGCTTCAATTGCACTATGTGCACTTCGAAGtataaaacattcaaaatgCTAAAACAACATATGAACATACACTACATGAACCACATATGCCACTGTGGGTCCACGTTCATAACAAAGCGATCACTGAACGCACACAAAACTACCCACATTGAGGGTAGCTACAAATGCGATTTCTGTGAGAAGGTATTCTCAAATAACACAAAGAAAATCTACCACCAGAGAACGTTACATTTAGGCCGTAGAACTATCAGGAATTGTCCATACTGCGAGGAGTCATTCCCGACTCATTACCAACAGAACCAGCATATTGTGAAAGTGCATAAAACTGAAGCCctgtataaatgtaatatttgtaaaagaGGGTATATTCGAAAAACTCTCTTAATGAAACATATTAAAAGATATCATATGATGGAGAGGAATCATCGGTGTGTGGAATGTGGGTGTAAGTTTTTCAATAGCCGTTCGCTTCGATTACACATGGTGAAGCATACGGGGGTGAAAAGGTATGAATGTAAGATTTGTAAAAAGACATATGGGAGAAATACCACGCTGACAGCGCATATGCGGATACACAATAATGATAGACGGTTTAAATGTGATATATGTGATAATGCATTCGTGCAAAAGTGTAGTTTAAAAAGTCATTTGTTGTCCCACCACGGTGTAATTAAATCGTCTAGTGAGATCTTtgcgaaaatataa
Protein Sequence: MTLPTICRCCLAKGLHTDMEIPNIYEGKKEIYFEMLQECFNIDLSTQKKSKSICNKCITRLRDAHDFMQQVLYTEEIITTILEENNGNIFFISVDECEELKSEDDSTDGLYLNIDDVSIEVKSDNCDNSDNSDNVEEKESKAKEVIKSSGAKRKPSTKKSSRKSRSEKKVSKLTRPLHEKDKQKKNLTTLLKYSNILVFKDRTLAGIICGYCDKVFEDPLELRSHTDSDHASERLFIPLDYKKYPIKLEISNLKCTICDEDIDNLQTLKEHLVNRHDKFIYNDIKDYLMSFKFTSDSFNCTMCTSKYKTFKMLKQHMNIHYMNHICHCGSTFITKRSLNAHKTTHIEGSYKCDFCEKVFSNNTKKIYHQRTLHLGRRTIRNCPYCEESFPTHYQQNQHIVKVHKTEALYKCNICKRGYIRKTLLMKHIKRYHMMERNHRCVECGCKFFNSRSLRLHMVKHTGVKRYECKICKKTYGRNTTLTAHMRIHNNDRRFKCDICDNAFVQKCSLKSHLLSHHGVIKSSSEIFAKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01205169; iTF_01205172; iTF_01205979;
90% Identity: iTF_01205169; iTF_01205979;
80% Identity: -