Pmad010452.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- -
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000031.1:1046064-1056739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00022 0.014 15.8 0.2 1 23 198 221 198 221 0.93 2 10 0.094 5.8 7.5 0.6 2 23 247 269 246 269 0.91 3 10 0.33 20 5.8 0.8 2 23 293 314 292 314 0.87 4 10 0.011 0.66 10.4 2.4 5 23 321 339 318 339 0.96 5 10 0.0021 0.13 12.7 1.9 1 23 344 367 344 367 0.97 6 10 0.00031 0.019 15.3 0.6 3 23 376 397 374 397 0.93 7 10 9.4e-06 0.00058 20.1 1.0 1 23 403 426 403 426 0.98 8 10 5.1e-06 0.00031 20.9 1.3 1 23 432 454 432 454 0.98 9 10 2.4e-07 1.5e-05 25.1 0.7 1 23 460 482 460 482 0.98 10 10 0.00013 0.0079 16.5 3.8 1 23 488 510 488 511 0.96
Sequence Information
- Coding Sequence
- ATGGGATTACCAAGTGTCTGCCGTTGTTGTTTAGCTGAAGGAATGCACAGAGACATTGATATCCCATACATTAATGATGAaagtaaagaaatttattCCAACATGCTTCaggaatgttttaatattgatcTATCTACACAGGAGAAATCAAAGTCAATATGCCTTAAATGTATTACACGATTAAGAGATGCCCATGATTTTAAGCAGCAAGTTGTCTATTCCGAAAAGATGATTACTAAAGTATTGCAGGAGAGAATTgTTGAGGCAGTACCTATCAAGTGTGAAATGAAGTCTGAAGATGAGAATTGTAATGATGTAGAAGACGGCCTGTTCTTAAATGTTGttaaagaagaattaaaaaagaaaacaaaagaaaaagttaaaataaaaaaaccaagGGGATCAAAGAGAAATTTGGCTCTTATAAAAAGAATTTCAAatgacaagaaaatgaaaaatatacttagTACAGTAAATGagctaaaattaattacaaaacctCCGCACGAGAAAGACAAACATAAAGAAAATCTGgcaatacttttaaaatactcaAATGTATTGCCTTTTAAGGACAAATCTTTGGTTGGATTCATCTGTGGATATTGTGATAAGACCTATGAAGATCCATTAGATCTTAGGAGCCATACGGAATATGACCACAAGAGTGAGAGGCTAGAACTATACACACCATCGGACTTAAatgactgtcaaataaaacTAGAGGTCTCTAACCTAAAATGCACAATATGCGAAGAACATgtagaaaatttacaaaaactcaaagAGCATTTAGTGAATAGCCACAATAAATCCATTCATAATGACATTAAGGACCACTTAACTCCCTTTAAATTGACAAAAGGCGATATTTTTAACTGCATAATGTGTGCTTCAACTTATGAAACATTCAAAATGCTCAAACAACATATGAATGTACACTATAATAACTATGTATGCCATTGTGGATCCACATTCATAACAAAGAGATCTCTGACTGCACACAAAACTACCCACATTGAGGGTAGTTTCAAATGCGACTTATGtgagaaaatattttctaatcgTGCCAAGAAATCCTACCATGAAAGAACATCTCACTTAGGCTGTAGAAATATTAGTAATTGTCCATATTGTGATGAATCATTCAGAAGTTACTATCAACGGAACCAGCATTTGGTGAAGGTACATAATACAGAAGCCCAGTATAAGTGTAATATATGCAACAAAGGGTATATTCTCAAGAGCCTTTTGATGAcccatattaaaaaaaatcatatgatGGAAAGGAATTATCAATGTGTAGAATGTGGGTACAAGTTTTTCAATAGCAAAACGCTAAAGGCACATATGGTAAAGCACACTGGGGAGAGGAAATATGCATGCGAGATATGCACTAAATCATATGCAAGGAAGTATACATTAAGGGAGCATATGAGGATACATAATAATGATAGAAGGTTTAAATGTGAATTATGTGGTAATGCATTTGTGCAAAAGTGTAGTTTGAAAAGTCATTTGCTGTCCCACCATGGTATGAGTATTCCAGCTTGTGAGATTTCTGTTgcatcttaa
- Protein Sequence
- MGLPSVCRCCLAEGMHRDIDIPYINDESKEIYSNMLQECFNIDLSTQEKSKSICLKCITRLRDAHDFKQQVVYSEKMITKVLQERIVEAVPIKCEMKSEDENCNDVEDGLFLNVVKEELKKKTKEKVKIKKPRGSKRNLALIKRISNDKKMKNILSTVNELKLITKPPHEKDKHKENLAILLKYSNVLPFKDKSLVGFICGYCDKTYEDPLDLRSHTEYDHKSERLELYTPSDLNDCQIKLEVSNLKCTICEEHVENLQKLKEHLVNSHNKSIHNDIKDHLTPFKLTKGDIFNCIMCASTYETFKMLKQHMNVHYNNYVCHCGSTFITKRSLTAHKTTHIEGSFKCDLCEKIFSNRAKKSYHERTSHLGCRNISNCPYCDESFRSYYQRNQHLVKVHNTEAQYKCNICNKGYILKSLLMTHIKKNHMMERNYQCVECGYKFFNSKTLKAHMVKHTGERKYACEICTKSYARKYTLREHMRIHNNDRRFKCELCGNAFVQKCSLKSHLLSHHGMSIPACEISVAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205959;
- 90% Identity
- iTF_01205152;
- 80% Identity
- -