Pmad016198.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- -
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000079.1:162935-177062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0021 0.13 12.7 2.8 1 23 268 290 268 290 0.99 2 12 0.0002 0.012 15.9 4.0 2 23 298 319 298 319 0.98 3 12 0.094 5.8 7.5 1.3 1 23 323 345 323 345 0.91 4 12 7e-06 0.00043 20.5 1.3 1 23 350 373 350 373 0.98 5 12 0.002 0.12 12.7 3.3 1 23 377 400 377 400 0.95 6 12 0.0023 0.14 12.6 0.3 2 22 415 435 415 439 0.92 7 12 0.0001 0.0063 16.8 0.2 3 23 449 470 449 470 0.98 8 12 0.27 17 6.0 0.4 2 23 494 516 493 516 0.96 9 12 6.4e-07 3.9e-05 23.7 1.0 1 23 527 549 527 549 0.98 10 12 7.3e-08 4.5e-06 26.7 1.3 1 23 555 577 555 577 0.98 11 12 0.0007 0.043 14.2 2.4 1 21 583 603 583 605 0.93 12 12 2.2e-06 0.00013 22.1 0.2 1 23 611 634 611 634 0.98
Sequence Information
- Coding Sequence
- ATGGGAAAAGTAAAAGCTTGTAGGATTTGCTTACAAATGGACTTGAGGCTAGAAAATTTACACTCGAACTTTTTGGGagtttattacgaaataataacTGGTTTGAACATTAGTAAGAATGAATTGCCgggttatttttgttatgaatGTGCTGCTTTATTGAAgaaattctatatatttagACAGAAAAGCCTTAAAGGTCTAGAAGTGTTGCAGGGTGTTCTAAATACTTATGGCAAGATTACAGAGAAcaccattaaaaaaatgcaaatgaAATTGTCTTATTTCGAATCCGGTTTGAGTGTTTTTAATggtttttcaatcaatatttttccCGATGGAGTTGTAGATATAATGGAAAATGAAGATATGTCTGAGGACAATAGCTATGATTTCAACAATACAGATAGttgtttagatttttatgatttagtTAAAGAAGATTCTTCTGAAAATCTAAATAGTGATATTGAAGAAAGTTACATAGATTGGTTAAGTGATGAGGAGGATATTGCAATAGATAGTAGTATAACAAATATTGAAAATGAGatgataataaacaaacagtCAAATGATGAGTCAAACGAAGAAACAGTGGAGCAACCAAGAAcctcaaaattaaaaaaatctgtaaaaGTACACAAGAAACCAGTCCAACTTTTAAGAAAGGATGTTATTCAGCCAAAGCAAATtgaagattttaattttgagaACTATGTCGACGTCATCACAATCACGgaagAAGAACAAAAAGAAGAGATAAGGAAACGTAAAGATACAGAAAGTTACGAAACTGCACCATTTAAATGCGAGTTgtgttttaaagtatttttggaCCCGCAAACTTGGCAACACCATATGAAGAAACATGATGTGTCGTCAGGAATGGCGCAGTGTAAAATCTGTAAGTTGCGCTTTAAATCAAAACGTCGTCTTAAGAATCATATGATGTATCACGCCAAGAAGTATAAATGCAAATACTGTTCATACGTTTCGCGAACTACATCACAAGGTTGGAATCACATATTCTGGCATCAAGGGGTTTTGTACCAGTGTCCACATTGCGAAGAAATGTTTTCCCAATGGACGTCGTACCTCAGCCACGTGCGAATAAAGCATCCATCGGACTACATCTGCCCTCACTGCGGATACTCCTTCTTGTCACAACATGGTCTCAAAATGCACAAGAATTTAAAGCATCGTGGTGTCGCTgACCTAAATGAAGACAACGAGGATCTCCCATACTGCTCAGTATGCGACATGAAGTTTGCGTCATTTGAGGCTTACAATCGGCATATGGCGACCGCGAAAAAACATATCGTGGAATCTGAAAAGAAAAATGGATGTCGCGAATGCGGTGAAAAGTTCTCAAGCATTGATGAATTGCGGGCTCATTCGCGTACTGCGCACAGGCACAAATCGTGTAAGGCGTTACTCAAGCGATACAAAGAGAAGTCGGATAGTCGAACTTGGCCCACGAAATGCTCGCTTtgTTCTGAAGAAATAGCAAACGCGCGTCAGTACTGGTCGCACTTCAGACGGGACCATCCCAATGACGATTATCCCGTGGAGAAGAAATATATCTGTGATGTTTGTGGAAAATCCTTCCGgAAAAACTCATTCTTAACCATTCACAAGCGGATCCATAATGGTGAAGTACCCTTCAAATGCAACGAATGCGACAAAGTTTTCTCGAACAAAACCAATCTTCAGATGCACGAGAGATGGCATTCTGACGAGCGGCCCTTTATTTGCAGCGATTGCGGTAAAGGGTTCAAGGTGAAAACGGCTTTGGATAGGCATTTCCGAtgTCACACTGGTGAGAGGCCGTACAAATGTAAAGTGTGCGGAAAAGCCTTCGCCCAATCCAACAGTGTTAAAGTGCACGTCAATACAGTACATCTCAAACAACCGTATATTAGGCGAACTCGACTTAAGAAAAGGGTCAAGAAATTAGCAGCAGACACTACTGTACTATATTGCACATag
- Protein Sequence
- MGKVKACRICLQMDLRLENLHSNFLGVYYEIITGLNISKNELPGYFCYECAALLKKFYIFRQKSLKGLEVLQGVLNTYGKITENTIKKMQMKLSYFESGLSVFNGFSINIFPDGVVDIMENEDMSEDNSYDFNNTDSCLDFYDLVKEDSSENLNSDIEESYIDWLSDEEDIAIDSSITNIENEMIINKQSNDESNEETVEQPRTSKLKKSVKVHKKPVQLLRKDVIQPKQIEDFNFENYVDVITITEEEQKEEIRKRKDTESYETAPFKCELCFKVFLDPQTWQHHMKKHDVSSGMAQCKICKLRFKSKRRLKNHMMYHAKKYKCKYCSYVSRTTSQGWNHIFWHQGVLYQCPHCEEMFSQWTSYLSHVRIKHPSDYICPHCGYSFLSQHGLKMHKNLKHRGVADLNEDNEDLPYCSVCDMKFASFEAYNRHMATAKKHIVESEKKNGCRECGEKFSSIDELRAHSRTAHRHKSCKALLKRYKEKSDSRTWPTKCSLCSEEIANARQYWSHFRRDHPNDDYPVEKKYICDVCGKSFRKNSFLTIHKRIHNGEVPFKCNECDKVFSNKTNLQMHERWHSDERPFICSDCGKGFKVKTALDRHFRCHTGERPYKCKVCGKAFAQSNSVKVHVNTVHLKQPYIRRTRLKKRVKKLAADTTVLYCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204264;
- 90% Identity
- iTF_01204264;
- 80% Identity
- -