Basic Information

Insect: Pieris macdunnoughii
Gene Symbol: -
Assembly: GCA_905332375.1
Location: CAJOBZ010000031.1:2752303-2761232[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.012 0.75 10.3 0.0 3 23 112 132 110 132 0.97

2 15 0.0027 0.17 12.3 2.1 1 23 219 241 219 241 0.99

3 15 3.6e-05 0.0022 18.2 1.1 1 23 247 270 247 270 0.97

4 15 0.34 21 5.7 3.9 1 23 275 298 275 298 0.93

5 15 7e-07 4.3e-05 23.6 0.3 2 23 453 474 452 474 0.98

6 15 0.00018 0.011 16.0 1.5 1 23 480 502 480 502 0.98

7 15 0.58 36 5.0 9.7 1 23 551 573 551 573 0.96

8 15 0.037 2.3 8.8 0.3 1 23 580 602 580 602 0.95

9 15 0.0034 0.21 12.0 2.7 1 23 608 630 608 630 0.98

10 15 8.2e-05 0.005 17.1 2.0 1 23 636 658 636 658 0.97

11 15 0.00055 0.034 14.5 2.9 1 23 667 689 667 689 0.99

12 15 9.3e-05 0.0057 16.9 0.6 2 23 735 756 735 756 0.97

13 15 0.0047 0.29 11.6 3.2 1 23 773 795 773 795 0.96

14 15 1.8e-06 0.00011 22.3 0.7 1 23 801 823 801 823 0.98

15 15 3.7e-05 0.0023 18.2 5.2 1 23 829 852 829 852 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.012	0.75	10.3	0.0	3	23	112	132	110	132	0.97
2	15	0.0027	0.17	12.3	2.1	1	23	219	241	219	241	0.99
3	15	3.6e-05	0.0022	18.2	1.1	1	23	247	270	247	270	0.97
4	15	0.34	21	5.7	3.9	1	23	275	298	275	298	0.93
5	15	7e-07	4.3e-05	23.6	0.3	2	23	453	474	452	474	0.98
6	15	0.00018	0.011	16.0	1.5	1	23	480	502	480	502	0.98
7	15	0.58	36	5.0	9.7	1	23	551	573	551	573	0.96
8	15	0.037	2.3	8.8	0.3	1	23	580	602	580	602	0.95
9	15	0.0034	0.21	12.0	2.7	1	23	608	630	608	630	0.98
10	15	8.2e-05	0.005	17.1	2.0	1	23	636	658	636	658	0.97
11	15	0.00055	0.034	14.5	2.9	1	23	667	689	667	689	0.99
12	15	9.3e-05	0.0057	16.9	0.6	2	23	735	756	735	756	0.97
13	15	0.0047	0.29	11.6	3.2	1	23	773	795	773	795	0.96
14	15	1.8e-06	0.00011	22.3	0.7	1	23	801	823	801	823	0.98
15	15	3.7e-05	0.0023	18.2	5.2	1	23	829	852	829	852	0.98

Sequence Information

Coding Sequence: ATGGTGGAACCAGCAGTTTCTGATGTGGATCCGTTGGGAGCCTTCTCTTACCTGTCTCAGTACCACTATGGTCAGTTTCCAAACACAATTAACCCAACATATCAGTTTGCTGTTAAACCAGAAGAATTCTACACATTACCTCCAAGTAGTACTTCTAATAACACCAACTATGAAAATACAACTCCCACAGCTCATATACAAAGTGAGAAACAACAAGATCCAAGTGTAAACTTtgatataaaaccttttttaaaaaccaaTGGCAAAGttaaaaaagagaaaaagagttttatttctcaaaagATTACCCAAGAAGGATATCCATTCTATGGCTGTGCTGTTTGTAATATAAGTTTTCCGACACTTAGAGAATTAGATTCACATGTTGCAACACACAAGGGTAGAACAACAAGTTACGATTTAAGAGTGAAGAATGCATTGAAAAAGAAAAGATTAAAAAAGGAacagaaaaaattaaagaaaatgaaaaaggAGACAGTGCCTGATATTGATATTAAACCTGAAGATGGTTATATTGGTAACGAGAAAGCGACAGAATTTGGTTTGAACAACAATGATgtgaaaaacaaaagtaatcCAGAAGAACTAAAAACCCAAGAAAAGGCAACAGAATCCACAAATTTAGAaaagatttataaatgttttgccTGTCAGAAACAgtttatattaagttattatttgaAGTTACATGTTAGATCACATACAGATGAAAAGCCATACACCTGTGAACAATGTGGGCAATCCTTTATAACGGCTAGCAAGCTCGGGCGACACAATAAGAGGTTTCATTTATCTGTCCAATATCAGTGCAGAATTTGTTATAGAAAGTTTTACAGATTTGAAATCCTAACGCgacattttgataaaaaacaCGCTGAAGACAAATTAGAAGGTGAACCATATGATTTCAATGCAATATTACCATACTTAAAAGAATTAGAAGAACAACTACGCGAAAAACAAGAAATGGAGAAATCTAAGTCGAAAGATGATTTATGGTCTAGCGAATGGCCAAGTCCGACAGTAGAAAACGAGAAAGAAGATATTAAAGAGAGTAAAAAAGAAGTAGAAGATACAAATTTAGAAATAGAAGTTGTTAAAGTGCCTATGGATGATGTTGaaattaaagaagaaattgAGGATGttgattataattatgatGATGCGGTTAATGATAATGGAATTAATGGTGATACAAATAATGATGTGAATGAGGCTAATGATAATGATAGAGACGACGCAAGTGTAAATAATgacGATTCAGACGAGGATTATTTCCCATCAAACACTTGGTTGAAACCAGAGGAGCCATTAGAAATAACAACGAACGGCGTCAAGTGTCCCGTGTGCGATAAAAGTCTTAGTACGGCGTCGTACATGCGCGTGCACATGCGTACGCACACGGGCGAACGTCCGTTCAAATGCTATATATGTGATATGGGGTTCATAACGGCGAGCAAAATGCACAGGCACGTTTTGACGCATCCGGAATCGTTGAAAGATGAAGTCAAATCGGAAAATGATGCGAAAAACGTAAAGGATGATGAGGATAAaGAGAAAGTGAAAAAGGCTGTCAAGAAATTATCGAAGAAAATCAACGACAAGTCGAAGAAATATCGGAAGAGGCCGCACGCGTGTGAATATTGTCATAAGAGATTTTTGCATCTTCATACATTACAGATCCATAAAAAATCCCATGAAGGcgaagaaattaaatatagatgCCACTACTGTCTTCTAGAAGTTGAGGATGAAGAGAATCTAAAGGTTCACGAAGGGAGCCATACAGGACCAAAGCCCTACCAATGTACTATATGTGATAAGTTGTATAAAAAGAGAGAGAGTATGctttATCATAGAAAAAACCACAAGCCCGAACGGGAATTCATATGCGATATATGCACGAAATCTTTTAACGCACAGTGCAAACTGCAAAGGCATATAATAAGTCATAGTGTGGACAAATATATGTTGAAGTACGAGTGCCCTGTCTGTGCGCAtatgtttaatacaaaatatcacGTGCAGATGCATTTGTCCACACATCAGAGGGAGGGAGtGATACAAGAGGAAAATCGCAACGAAATCCTGGCTATGGTCTTACAAAACGCGCGTAGAATTCCCCGCAAGGGCGAGACCCACAACTTGACTGACGTCATACCGTCGGACGAGCGAAGCCGCGTGTGCAACATATGCGGCGAGGTGTTCCAGCACTTCTATTACCTCGAGGAACACCTCAAATCCCACGGCTCGAAGATCGCGATAGAGAACATCGACAAAGAGGAGgagaagaaatatatttgtgaAGTTTGtaataaaggttttaaattgcattattatttgaaattgcATAGCTTTACCCACACAAAGGAGAAGCCATTCATTTGCCAGCAGTGCGGGAAGGGATTCATCACCAGAGGGAAGCTGAAGAGGCATTTGGAGACCCATACGGGTCTAAAGAAATACCAATGCCATATTTGTTGTAAGTTTTTTACGCGGCCTAGTTATTTAAGGGTTCATGTGAGGACTATACATGGTGCTCAGTTGGTGAGGTTGGGGCTTAGGACGTAA
Protein Sequence: MVEPAVSDVDPLGAFSYLSQYHYGQFPNTINPTYQFAVKPEEFYTLPPSSTSNNTNYENTTPTAHIQSEKQQDPSVNFDIKPFLKTNGKVKKEKKSFISQKITQEGYPFYGCAVCNISFPTLRELDSHVATHKGRTTSYDLRVKNALKKKRLKKEQKKLKKMKKETVPDIDIKPEDGYIGNEKATEFGLNNNDVKNKSNPEELKTQEKATESTNLEKIYKCFACQKQFILSYYLKLHVRSHTDEKPYTCEQCGQSFITASKLGRHNKRFHLSVQYQCRICYRKFYRFEILTRHFDKKHAEDKLEGEPYDFNAILPYLKELEEQLREKQEMEKSKSKDDLWSSEWPSPTVENEKEDIKESKKEVEDTNLEIEVVKVPMDDVEIKEEIEDVDYNYDDAVNDNGINGDTNNDVNEANDNDRDDASVNNDDSDEDYFPSNTWLKPEEPLEITTNGVKCPVCDKSLSTASYMRVHMRTHTGERPFKCYICDMGFITASKMHRHVLTHPESLKDEVKSENDAKNVKDDEDKEKVKKAVKKLSKKINDKSKKYRKRPHACEYCHKRFLHLHTLQIHKKSHEGEEIKYRCHYCLLEVEDEENLKVHEGSHTGPKPYQCTICDKLYKKRESMLYHRKNHKPEREFICDICTKSFNAQCKLQRHIISHSVDKYMLKYECPVCAHMFNTKYHVQMHLSTHQREGVIQEENRNEILAMVLQNARRIPRKGETHNLTDVIPSDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIENIDKEEEKKYICEVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICCKFFTRPSYLRVHVRTIHGAQLVRLGLRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01205912;
90% Identity: iTF_01205912;
80% Identity: -