Pmad012315.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- CRZ1
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000047.1:320578-335110[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.9e-07 4.2e-05 23.6 1.9 1 23 14 36 14 36 0.97 2 13 0.00018 0.011 16.0 2.1 3 23 44 65 43 65 0.98 3 13 3.6e-05 0.0022 18.2 5.7 1 23 71 93 71 93 0.97 4 13 4.9e-05 0.003 17.8 2.3 1 23 99 121 99 121 0.98 5 13 0.00015 0.0094 16.3 6.4 1 23 127 149 127 149 0.98 6 13 0.00086 0.053 13.9 1.2 1 23 156 179 156 179 0.89 7 13 5.9e-07 3.6e-05 23.8 0.3 2 23 188 210 187 210 0.96 8 13 0.19 12 6.5 1.2 2 23 217 238 217 238 0.97 9 13 0.0038 0.23 11.9 1.2 1 23 244 268 244 268 0.90 10 13 0.00012 0.0077 16.5 3.5 2 23 275 296 274 296 0.96 11 13 0.0001 0.0061 16.8 0.2 2 23 305 326 304 326 0.96 12 13 4.4e-05 0.0027 18.0 0.2 1 23 332 354 332 354 0.96 13 13 0.0052 0.32 11.4 3.0 2 20 361 379 360 381 0.95
Sequence Information
- Coding Sequence
- ATGCCTAAAGTGAAAAAGAAATCTGCAAAATCAAGGACTCATAAGTGCCCAAAATGTGAAAAGAAATTTTCGGATAGTTCAGGTCTAAACCGTCATCTTGAATTACATGTAGAGGATCGTCTTCATGGATGTACTGTATGCAAagctacatttaaaacaaagagGTACTTAAGCAGGCACAGAAAGCGTGTTCATAGTGAGCCTGAAGAACATGAATGCAAGGATTGTGGCAAAAAGTTTCATTTTAAGAGCTCACTTAATCAGCATAGGCTGGTGCACACtgATGAGAGGCCGCACAAGTGCAAATGGTGCAATAAAGGGTTCAACTCCACATACAGCTTGTCTAGTCATATCCTAATACATGagaattcAAAGCCATTTAAGTGCACCTTCTGCGACTATGCGTGTCGTGATAGCTCGACattaagaaaacataaaaagagACATATAGGCCAAGTACCTACTTATAACTGCAAGATATGTGAGaaaaaattCAGCCAAAAAAGACTTCTAGAATTTCACGTGGCCAaagaacatttaaatattgacgTGAACGTATTACCCTGCGATAAATGCGGAAAGATGTTTAGGGATAAAGCTTCGCTGAAGTTGCATATTCAAAAAATTCACAAACGACTCTACGCCGCGAAATGTCCCGTGTGCAGTGTTACGATAAGCTGCAAACAAAATATGGAAGCCCATCTGAGATCACACCTCGACGAACGACCGTTCTGTTGTACTTTTGAAGGCTGTGGGAAGGCTTTTAAGGACGCGAGGGCACTATATCTTCACGAATTCCTCCACTATCCGGAGCGCTATTTGAAATGTAAACTTTGTGATAAACGCTTCTCGCGTCAGTCTAGGTTGGACAGTCATAAGAAGCAGCATTTCCTCGTCAAGGAGAAATATGTTGTGTGTGACTATTGTAATGTCAGaTTTTACTCAAAGAATTACCTCATAAATCACATAGCCAAAcacttatatacaaataagtaTATATGCGATATTTGCAATAAGGAGTTTTGTACAAAGCCAAGTCTCATTGGACATATTATTGCACATAATTCAGAAACGGATAAGCAGTGCAAACTGTGCAAGAAGTCCTTCAAAAAACATATCTACCTTAAAAGCCATTATTGGAATACacattgtattaaatataagattACTAGAAAaaaTGTGAAAATAAAGAGGACTCGAAAGGTTCCGGAAATAAAAACGGAAGCTGCTGAGAAATTTGTGATTAAGTCGGAACCCTTGAGTGatacaGACGAAGAGACGGAATACTCGAAGTCAGTTTTGGCTGAAGATTTAAAGTCTTCCGGCAATCAAATGAACATCTTCTACGACATTAAAACGATGGACAGGAATAAAAtacaTAAAATCAACGATCCAAGGATAAATAAAGAACTAAAAGAGACAGTTAAGATAAAGATCAAACGGTTATTGCAAAAAGTGCAGACATTGAAAGAGAGGTGCGATCTGGAGAGAGCGAGAAGGAGATATAACAAGCGAATggagaatttattaaagagggAAGAACCACAGACTGAATTAACAGAGACCGAAGTCGGAAAAATAACTTGTGAAAGAGATGaaaatggaaaattaaaattcaacgTTCATCAGTGCtatgtttgttttaatCTATATAAAACCAAAGAAGAGCTGTTGGATCATTGCCAGCAACATTTCGACCTGTGCCACACTAACACGTTACGGAAGTGCCCCTGTGTGACCACGTCTCGAGTCTGA
- Protein Sequence
- MPKVKKKSAKSRTHKCPKCEKKFSDSSGLNRHLELHVEDRLHGCTVCKATFKTKRYLSRHRKRVHSEPEEHECKDCGKKFHFKSSLNQHRLVHTDERPHKCKWCNKGFNSTYSLSSHILIHENSKPFKCTFCDYACRDSSTLRKHKKRHIGQVPTYNCKICEKKFSQKRLLEFHVAKEHLNIDVNVLPCDKCGKMFRDKASLKLHIQKIHKRLYAAKCPVCSVTISCKQNMEAHLRSHLDERPFCCTFEGCGKAFKDARALYLHEFLHYPERYLKCKLCDKRFSRQSRLDSHKKQHFLVKEKYVVCDYCNVRFYSKNYLINHIAKHLYTNKYICDICNKEFCTKPSLIGHIIAHNSETDKQCKLCKKSFKKHIYLKSHYWNTHCIKYKITRKNVKIKRTRKVPEIKTEAAEKFVIKSEPLSDTDEETEYSKSVLAEDLKSSGNQMNIFYDIKTMDRNKIHKINDPRINKELKETVKIKIKRLLQKVQTLKERCDLERARRRYNKRMENLLKREEPQTELTETEVGKITCERDENGKLKFNVHQCYVCFNLYKTKEELLDHCQQHFDLCHTNTLRKCPCVTTSRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -