Pmad010264.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pieris macdunnoughii
Gene Symbol
-
Assembly
GCA_905332375.1
Location
CAJOBZ010000031.1:202612-207135[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.093 5.7 7.5 0.5 1 23 69 92 69 92 0.95
2 28 0.24 15 6.2 2.8 2 23 162 183 161 183 0.95
3 28 7.9e-05 0.0049 17.2 0.3 1 23 187 209 187 209 0.97
4 28 0.011 0.7 10.4 4.9 1 23 214 237 214 237 0.97
5 28 0.033 2 8.9 1.1 2 23 244 266 243 266 0.95
6 28 0.0001 0.0064 16.8 1.9 1 23 272 295 272 295 0.98
7 28 0.044 2.7 8.5 5.1 1 23 301 323 301 323 0.95
8 28 2.4e-05 0.0015 18.8 2.8 1 23 330 352 330 352 0.99
9 28 0.012 0.72 10.3 5.8 1 23 358 381 358 381 0.96
10 28 0.0053 0.32 11.4 0.3 1 23 444 467 444 467 0.94
11 28 0.18 11 6.6 1.0 2 23 494 516 493 517 0.93
12 28 0.068 4.2 7.9 3.0 2 23 539 560 538 560 0.97
13 28 2.4e-06 0.00015 21.9 0.3 1 23 564 586 564 586 0.98
14 28 8.7 5.3e+02 1.3 5.1 1 19 591 609 591 614 0.87
15 28 0.025 1.6 9.3 0.8 2 23 622 644 621 644 0.91
16 28 7.4e-05 0.0045 17.3 2.2 2 23 652 674 651 674 0.96
17 28 0.00012 0.0072 16.6 1.0 1 23 680 702 680 702 0.95
18 28 4.3e-06 0.00027 21.1 1.5 1 23 708 730 708 730 0.98
19 28 0.00092 0.057 13.8 1.7 1 20 736 755 736 755 0.95
20 28 0.031 1.9 9.0 0.2 1 23 817 840 817 840 0.92
21 28 0.032 1.9 9.0 1.3 2 21 867 886 866 889 0.94
22 28 0.047 2.9 8.4 2.4 2 23 912 933 911 933 0.97
23 28 3.5 2.1e+02 2.6 0.5 1 14 937 950 937 959 0.84
24 28 0.0051 0.31 11.5 3.6 1 23 964 987 964 988 0.96
25 28 0.021 1.3 9.5 2.8 1 23 994 1017 994 1017 0.95
26 28 0.0026 0.16 12.4 1.6 2 23 1025 1047 1024 1047 0.96
27 28 0.00015 0.0095 16.2 2.1 1 23 1053 1075 1053 1075 0.97
28 28 0.00011 0.007 16.7 3.8 1 23 1081 1104 1081 1104 0.98

Sequence Information

Coding Sequence
ATGATGTTCAGTcacgtaaataatataatactaagCAATCAATGTACTACAAAATACGTTTTCTTTATAGGTGAACAAGGGAGTGTAAAACCCGTCGGATTAGCAGGTACCAGAAACccagaattaaaaaaacatttcgaTAATTTAGGACTCATATTAAAGTGGTCTAATGCGACTCCAATCAAGACTTACGGAGGTAAAGGCTATACGTGCTCCTACTGTCTGCAACAATTCCTAGTACCAGCTGATCTAAAGAAGCATACACAAGAAACACATAGCAAAATTGTTGGTCCAATAGTAAAAAAGTCAGACTTAAGAGGTTTTCATATGAAACTAGACATTACTGACTTGGAATGTGTCTGTACAAAAACACTTGATGATATAGAAGAACTTGTAGATCATTTGTGTGAAGAACacgatttatattttcatactgatataaaaaattacattataccCATTAAGTTTTACAACGATGAACTCCGAtgctatatatgtataaacaaattttgttcGTTTAAAATGCTGATAAAACACATGAACGTACATTTTAGAAATTTCGTTTGTAACGTTTGTGATGAGGGCTTCGTTTATAGTAAGCAGTTGAAGAATCATTCCGCAACACATATGACTGGGTCCTTTAAATGTGATAGTTGTGACAAGTCCTTTGATACAAAGCAAAAGTGTCGGTATCATATAAGATCCGTGCATTCAATGAAAGCGAGAAATAAGTGCGTGTATTGCGGCGAGTTCTTTAGGGACTACCGTACCAAAATTTCACACCAGTACAAAGTGCATGGGGTAGCCTGTGTCTTCAAATGTACCGCCTGCGATAGAAGCTTTATTAGCCAGAGGGGCTATCAAACTCACATGCAAAGATATCACCTAATGGAAAGACGACATCCCTGCAAATATTGTGACATGAGATTTTACTCAACATCCGAATTAAAATGCCATCTTGCTAAACATAATATCGAAGTCCCTGTCTTCAAATGCGACATTTGTATGAAATCGTATAAGAGAAAAACGACGCTACGGAATCATTTGAGAATCCATTCTGATGATAGACCGTACAGATGTGAGGTCTGTAGTAGAACCTTCATCCATAAGTGTAGTTGGAGGAGCCATTTGACCTCTAAACATGGCATTATACAACCTAAAGTATCATATtGTCCACGACGTAGCCACACAAATGATCTTATTGATGATCAGAGTGTCAAAAAACAAAGAGAAAAGAAAGGTGTAGAATTGGCTAAACATCGTTACAATTTGGTGGAAATTCTGAGAAACTCAAACATCACACCAATACGATGCAGAGGCGGTATTGGATATGCGTGTTGCTATTGCGCACAAGAATATACTGACCCAGCCGACCTTAAAGCACATACATTAAACGAACATGAAGAAAATGAGAGGCTACGTCTATTGGACGGAAAGGACTTGTATAAATTTCACGCTAAACTTGATATAACTGAACTGAAATGTAAGATTTGTGAAACAAAAATCAATACTCTGGAACAATTTATCGATCATCTAATTAATAATCATCACATCAGCCTGCACAAAGATATAAAGAACCAGTTGTTCCCATTTAAGTTCGATCAAGAAGCACTGAGGTGCTGCATATGTGACGGTGTTTTTCACAAATTCAAATCCCTCCTGGAACACATGAACGTACACTATCGGAACTACGTTTGCAAAGACTGTGATGCAGGTTTCGTTAATCGCAGCAATTTAACCCAACACGCGAAACGCCATCAGCTGGGCACGTTCAACTGTGATTTTTGCTCAAAAGTATTCGATACATTTAGAAAGAAACGCTCTCACGAAAAATGCGTCCACACCCATTCACATTCACTCAACAAATGCGGTTACtgtaatgaaaaatttagAGATTACAGCAGAAAAGAGAAGCATTTAATCGATGTTCACGGTGTTATTAATAAGGAAACTAAGTGCCAAGCGTGcgataaaacttttaaaaatcaaaaggaATACAATTCGCACATAAAAAGATTGCACCTAATGGACAAGCGACACAAGTGTTCCGAATGTGATATGGCGTTTTATACCTCTGGCGAGTTGAAGAATCACGCTGTAAAACATACGGGTGAACGTAGTTTTGTGTGCGATGTGTGTCATAAAGCGTATGGACGGCAGAAGACACTCAAAGAACATATGCGTATACATAAAGATGATAGGCGGTTTAAGTGTGAGCATTGTGGCAAAGCGTTCGTTCAGAAATGTGGGTGGCGGGGACATATGTGGGCGAAACACGGTGGAAAGAAAAGTCGCACGACATTGACGTCTCAAAGAGATAGtgaaaatgataaaaatgATCCACCAAAAGCTAAACACGGTCACGAATTAGAGAAACACAGAACAAATATAAGAGAGATAATACTTTGGTCAAACGCAACGCCTATTCGTAATCGTGGTGGCATTGGCTACGCGTGCTGCTTCTGCCCTAACCAGTTTCCAGACCCTGCTGAGTTAAAAAGTCATACCATAGCAGCCCATGATGATATTACTAAATCCACATTCATGAAAGGAAAAGATATGTATAgctattttgtaaaattggACATAACCTATCTTACCTGTAAGATTTGCCTACAAAGTTTCGATACATTGGAAACCTTAATGGAACATTTAAAGTGtgaacataacaaaaatatctctaccgatataaataatcatattcTCCCATTCAAGTTCGATAGTGAACCGCTCAGATGCTTCATATGTCTTAATGTTTTTAACAAATTCAAGGCGTTGCAAGAACACATGCATACGCATTACAGAAATTTTATATGCGATGTGTGTGATGCTGGATTTGTTAATAGACATATACTCCTCTGCCATAGAGAAGCACACAAACTTGGTACGTTTAATTGCAAACAGTGCACAGAGGTGTTTGATACAATGAGGAAGCTAAAGCAACACGAACGAAAGATACATCACGGCTTCAATATGCCGTACAAATGTGGTTACTGTGATGAGAGATTCAAAGAAAGTTTTCATAAGTATGAACACCTCGCTAAAGTTCACGGGATTGTGGGTCCCTCTGTTAAGTGTCAAGCATGTGAGAGAACGTTTACGACGCAGCAGACGTTATTGCTGCATACAAAGAAGTATCATTTGATGCAAAAGCAGCATAAGTGTTCCTATTGCGATAAAGCATTCTTTGGAAAGAGGGAGTTGAACGATCACATAGTCAAACATACTGGAACGAGAGAGTACCGTTGTGAAGTATGCTTTAAATGTTATGGACGATCAAAAACTCTTAAAGAGCACATACGGAGACTGCACTCTGATGATCGAAGACATAATTAG
Protein Sequence
MMFSHVNNIILSNQCTTKYVFFIGEQGSVKPVGLAGTRNPELKKHFDNLGLILKWSNATPIKTYGGKGYTCSYCLQQFLVPADLKKHTQETHSKIVGPIVKKSDLRGFHMKLDITDLECVCTKTLDDIEELVDHLCEEHDLYFHTDIKNYIIPIKFYNDELRCYICINKFCSFKMLIKHMNVHFRNFVCNVCDEGFVYSKQLKNHSATHMTGSFKCDSCDKSFDTKQKCRYHIRSVHSMKARNKCVYCGEFFRDYRTKISHQYKVHGVACVFKCTACDRSFISQRGYQTHMQRYHLMERRHPCKYCDMRFYSTSELKCHLAKHNIEVPVFKCDICMKSYKRKTTLRNHLRIHSDDRPYRCEVCSRTFIHKCSWRSHLTSKHGIIQPKVSYCPRRSHTNDLIDDQSVKKQREKKGVELAKHRYNLVEILRNSNITPIRCRGGIGYACCYCAQEYTDPADLKAHTLNEHEENERLRLLDGKDLYKFHAKLDITELKCKICETKINTLEQFIDHLINNHHISLHKDIKNQLFPFKFDQEALRCCICDGVFHKFKSLLEHMNVHYRNYVCKDCDAGFVNRSNLTQHAKRHQLGTFNCDFCSKVFDTFRKKRSHEKCVHTHSHSLNKCGYCNEKFRDYSRKEKHLIDVHGVINKETKCQACDKTFKNQKEYNSHIKRLHLMDKRHKCSECDMAFYTSGELKNHAVKHTGERSFVCDVCHKAYGRQKTLKEHMRIHKDDRRFKCEHCGKAFVQKCGWRGHMWAKHGGKKSRTTLTSQRDSENDKNDPPKAKHGHELEKHRTNIREIILWSNATPIRNRGGIGYACCFCPNQFPDPAELKSHTIAAHDDITKSTFMKGKDMYSYFVKLDITYLTCKICLQSFDTLETLMEHLKCEHNKNISTDINNHILPFKFDSEPLRCFICLNVFNKFKALQEHMHTHYRNFICDVCDAGFVNRHILLCHREAHKLGTFNCKQCTEVFDTMRKLKQHERKIHHGFNMPYKCGYCDERFKESFHKYEHLAKVHGIVGPSVKCQACERTFTTQQTLLLHTKKYHLMQKQHKCSYCDKAFFGKRELNDHIVKHTGTREYRCEVCFKCYGRSKTLKEHIRRLHSDDRRHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-