Pmad010261.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- -
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000031.1:192267-196985[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00017 0.01 16.1 1.7 1 23 90 113 90 113 0.92 2 19 0.18 11 6.6 0.1 2 21 139 158 138 161 0.87 3 19 0.46 28 5.3 3.0 3 23 186 206 184 206 0.95 4 19 0.00026 0.016 15.5 0.3 1 23 210 232 210 232 0.97 5 19 0.0031 0.19 12.2 0.5 1 23 239 262 239 262 0.97 6 19 0.0023 0.14 12.5 0.9 2 23 270 292 269 292 0.94 7 19 3.8e-06 0.00023 21.3 0.9 2 23 298 320 297 320 0.97 8 19 3.2 2e+02 2.6 0.8 1 23 326 349 326 349 0.84 9 19 5.8e-05 0.0036 17.6 2.3 1 23 355 378 355 378 0.98 10 19 9.3e-05 0.0057 16.9 0.7 1 23 496 519 496 519 0.93 11 19 0.21 13 6.4 0.0 2 23 547 569 546 569 0.90 12 19 0.0024 0.15 12.5 0.4 2 23 592 613 591 613 0.97 13 19 0.0016 0.096 13.1 0.3 1 23 617 639 617 639 0.96 14 19 2.9e-05 0.0018 18.5 0.4 1 23 644 667 644 667 0.97 15 19 0.027 1.7 9.2 1.4 2 23 675 697 674 697 0.96 16 19 4.8e-05 0.0029 17.9 1.9 1 23 704 727 704 727 0.97 17 19 0.0006 0.037 14.4 0.6 1 23 733 755 733 755 0.96 18 19 6.8e-06 0.00042 20.5 2.1 1 23 761 783 761 783 0.98 19 19 1.3e-06 8e-05 22.8 1.0 1 23 789 812 789 812 0.98
Sequence Information
- Coding Sequence
- ATGCCTCAGACGGTACATTTATTCATGCGTCCCGAACGACACATGCTCAAGCTGTGCACGCTAACGACCACGCACGGTGTTCgcCGTACCGGAGCACGAAAAAAACGAAAACGGACCTTTAAAGAAGAGAACGAAAGTGAGCTGTGCGATAACAATATTGTGTATCGTGAAAAACATGTGTCTGAAATGCAAAAACAGTGGCATAACTTGAATATACTATTAACGTGTTCGAATATCACGCCGTTCAAAGATAGAAATGATGCAGGCTATATTTGCGCCTACTGTTTTAAGACATTCCCCGACCCTAACGAATTAAGGAGGCACACGCATTTCGATCACGTTAAGGAAAAACCCTCGTACAAGGCTGGCTCCGGGATGAGCAGCTTTGTAGCGTTTCTGGACATTGTTGATCTCAAATGCACCATATGTGATAAGCCAATGGAATCTATTAACGCGTTGACTAATCATCTTGTCGATGATCATTACAAGGAGTACTACTTGGATGTGACAGATTATTTCCAACCCTTCAAACTAACCAATGAACAACAGATTAATTGCTGTCTCTGCACTGCAATTTTTCACAATATGAAACTGTTAATGCAGCACATGAACGAACATTACAGAAATTTTATTTGCACTATATGTGGAGCGGGTTTTGTGAATAGCTTTCGATTGAATCGTCACGAAACAACTCATGTTAAAAAGAAATCTAGTTTTCCTTGTCGGCATTGTGGGCAGGTCTTCGCTGCTGAGTCTAAAAAAAAGGCACATGTGAATACAGAACATAAAGGTGTTGCAGGTGATAGTGTTTGCCAAATATGCAAAGCTCGGTTCAAGAATTACTATCAAAAGACACGGCATATGGCGCAGGTTCACAATGTCGAAGGTATCAAATGTGATATGTGCGAGaagaagtttaatttaaagtcgAATTTGATGCTACATATGCGAAGTGTTCATTTGAAGGAGCGCCCGTACGCATGCTCAGTTTGTAGTATGGGTTTCTTCATAAAGCGGCATATGTTGGGCCACTATTTGGCGACGCATACGAATGAGAGGAAATTCAAATGTGATATATGCAGTAAGGCATATGCAACGCAAAATAGTAGGAGAAAGCATATGAAGAAGAATCATGGTATTACTAAAGCTAAAAGCCAAACCGGTGACGTCAGCAAAACAAGTTTAAAGGAAAATTCACGgtctaatatttttgaacCTATTGTTAACCTAAAGATTGGACAAGAGGAGGAGCATTCCCTCTCAGACATTGAAGATTGTGAACCCAAATATCTCATTTATGACGAATATCGAGgtAAACAAGATAAAGGTGGGAAAGACGAGAAATCATTAAGCTCTAAACATTTATTGACAGATGATGACGTAAATGAAACACAAGAAAGAGAAATAGAAAAGCATCGTTTTAATTTaagacaaataataaaattcacaAACGCGACACCAATTCGCACACACAACGGAGTGGGTTATGTATGTGGTTTCTGTCATGAGCAATTTCCCCAACCggcgaacttaaaaaagcacACATTGGCCTACCACAAGCAGATTAGtgaattgaattttaatgGGTTTGGTCATAAAATGTCTTCGTATATTGTAAAACTAGATATTACTTCATTACAGTGCATCATTTGTGATAAAATTCTCAATGATGTATATGAATTAACCTCACATCTTGCTAACGAACATAATCAAAAAATACACACTGATATCAATAACCACATTGTACCaataaaatttgaatcggAGACATTGCGTTGTGTCATCTGTTTTCTTGTCTTTAACAAATTCAAGGCTTTGTTAGAACATATGAACACACATATTAAGAATTATACATGTTCCGAATGTAACGCTGGCTTCGTTAACCGGGCACGACTAAACAACCATAGTAAAGGCCACGAGACTGGTACATTTAAATGCGATTGGTGTCCGAAGGTTTTCACGAAAGCACGCAACATGAAATTGCATGAAAAAATTGTTCACATACGCTGTGGAAAAGTTAATAAATGCGGTCATTGTGGGGACATGTTCTCAACATACAGATCGAAAGAGAAACATATAATAAGCGTACATGGAGGTAGAGTTGAAACGTTTAAGTGCCAAGCGTGCAGTAGAACGTTTTCAACTAAAGGAGCCCTTAGAACACATACGAAACGGGATCATTTGTTTGAGAGGCGTTTTGCCTGTACGCTGTGTGAAATGAAGTTCTTTGTTAAGTCAGAGTTGCAAGACCACATGGTTAAGCACACCGGCGTACGGACCTTTGAATGTGGTGTGTGTCACAAGACATATGGACGTCAAAGGACTTTACGCCAACATATTCGGATACATGAAGGCGATCGAAGGTTTAAGTGCGATTACTGTGGGCAAGCGTTTATTCAGAAGGGTACGTGGCGAAGCCATATGCGTTCAAAACATGGCGTCGAGGTTTAG
- Protein Sequence
- MPQTVHLFMRPERHMLKLCTLTTTHGVRRTGARKKRKRTFKEENESELCDNNIVYREKHVSEMQKQWHNLNILLTCSNITPFKDRNDAGYICAYCFKTFPDPNELRRHTHFDHVKEKPSYKAGSGMSSFVAFLDIVDLKCTICDKPMESINALTNHLVDDHYKEYYLDVTDYFQPFKLTNEQQINCCLCTAIFHNMKLLMQHMNEHYRNFICTICGAGFVNSFRLNRHETTHVKKKSSFPCRHCGQVFAAESKKKAHVNTEHKGVAGDSVCQICKARFKNYYQKTRHMAQVHNVEGIKCDMCEKKFNLKSNLMLHMRSVHLKERPYACSVCSMGFFIKRHMLGHYLATHTNERKFKCDICSKAYATQNSRRKHMKKNHGITKAKSQTGDVSKTSLKENSRSNIFEPIVNLKIGQEEEHSLSDIEDCEPKYLIYDEYRGKQDKGGKDEKSLSSKHLLTDDDVNETQEREIEKHRFNLRQIIKFTNATPIRTHNGVGYVCGFCHEQFPQPANLKKHTLAYHKQISELNFNGFGHKMSSYIVKLDITSLQCIICDKILNDVYELTSHLANEHNQKIHTDINNHIVPIKFESETLRCVICFLVFNKFKALLEHMNTHIKNYTCSECNAGFVNRARLNNHSKGHETGTFKCDWCPKVFTKARNMKLHEKIVHIRCGKVNKCGHCGDMFSTYRSKEKHIISVHGGRVETFKCQACSRTFSTKGALRTHTKRDHLFERRFACTLCEMKFFVKSELQDHMVKHTGVRTFECGVCHKTYGRQRTLRQHIRIHEGDRRFKCDYCGQAFIQKGTWRSHMRSKHGVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -