Pmad005160.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pieris macdunnoughii
Gene Symbol
-
Assembly
GCA_905332375.1
Location
CAJOBZ010000010.1:553719-567818[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 7.7e-05 0.0047 17.2 0.1 3 23 130 150 129 150 0.97
2 17 7e-07 4.3e-05 23.6 1.2 1 23 156 178 156 178 0.99
3 17 4.3e-06 0.00027 21.1 2.7 1 23 184 206 184 206 0.99
4 17 3e-06 0.00018 21.6 2.6 1 23 221 243 221 243 0.98
5 17 4e-05 0.0024 18.1 3.1 1 23 258 280 258 280 0.98
6 17 2.8e-07 1.7e-05 24.9 1.5 1 23 295 317 295 317 0.99
7 17 0.0002 0.012 15.9 0.0 1 23 362 384 362 384 0.97
8 17 4.2e-06 0.00026 21.2 2.0 1 23 390 412 390 412 0.99
9 17 0.028 1.7 9.1 1.8 1 23 419 441 419 441 0.98
10 17 4.7e-07 2.9e-05 24.2 2.3 1 23 447 469 447 469 0.99
11 17 0.032 2 8.9 1.8 1 23 476 498 476 498 0.98
12 17 1.9e-06 0.00012 22.3 1.5 1 23 504 526 504 526 0.99
13 17 0.00036 0.022 15.1 0.7 1 23 533 555 533 555 0.99
14 17 2.1e-06 0.00013 22.1 1.9 1 23 561 583 561 583 0.98
15 17 0.0015 0.095 13.1 0.3 1 20 589 608 589 611 0.93
16 17 2.1e-05 0.0013 19.0 1.3 2 23 618 639 617 639 0.97
17 17 2.7e-06 0.00017 21.8 1.4 1 23 645 668 645 668 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAAGCTGAGCCTATGAATTTCTACACATCACATTCACATATAAACACCGGCCCGCCTACAATAGTCCGTTCAGATTCACATGGCATCATTATGAACCAGCATCTTCCACAAGAGGACTCCAAAGACAGCCTCATACAACACCAAGTACACCAACAGGAGCTGCTGGAACAGCACCAACAGGATATGCAACATGAACAGGATGATGATGATGTTGATAatcTAAGTTTCAAAGGTATGGACGATGAAGGCGTTGAAATGGACATGGACGGACGGCAATGCTCTCAGGGTATGGGTGTCGATTTGGGATCGGTTCAGACGAAGATGGAAGTGTCTAACGGTCAAGGTGTGCCACGATCTAAACCTCAAGCTTGTAAGGTTTGCGGCAAAGTGTTGTCATCGGCGTCTTCGTATTATGTCCACATGAAACTACACTCGGGCAACAAACCTTTTCAGTGCACGGTATGCGACGCAGCGTTCTGCCGCAAGCCATACTTAGAAGTGCACATGCGCACGCACACAGGAGAAAGACCTTTCCAATGCGATCTATGTCTCAAGAGATTCACGCAGAAGTCCAGTCTCAATACGCACAAACGTGTACACACCGATGAGCACCTTCGCGCATTGATGGTGAAGGAGCGGCCGTACAAGTGTGACCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTTGGCCGACATGGAAAGATACACACGGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGCTTCACTCAGAAGTCCAGCCTGGGCACTCATAAACGTATACACACCGTCGTTGTCTTTGATAACGCGTCGGAGATTGGCTGGGGGCCGCCGAATCAAGGCACGCGAGCCGTATTGCGTCGGCGACGTGCGTTACTCGCTTTTGTGTGTGCACTGGGCGCAGTGCAAGGGCGTCCATTCGCGTGCGGGCTTTGCCCGGCGGCGTTCGCCCGTCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATCCATAGACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCGGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGGACGCACACGGGTGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCGAGTCTCAACATTCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGTCTGCAGTGTCCGGCGGCCTTCACTTGCAAGCAGTACCTGGAGATCCACAATCGCACGCACACGGGCGAGCGGCCCTACCAGTGCGACGTGTGCCTCAAGAGATTCGCGCAAAAGTCTACGCTGAACATACACAAAAGAACGCACACGGTGCAAGGGCGGCCGTATCAGTGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCCTACCTGGAAATACACATGCGCACGCACACAGGCGAGCGGCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCTACCCTCAACATTCACAAGCGCATTCATACCGgGGAACGCCCCTACGCATGTGATATATGTCAGAAAAGATTCGCTGTGAAGAGTTATGTTACGGCTCACAGgtGGTCGCACGTAGCCGACAAGCCGCTAAGTTGCGAGCGTTGTTCAATGACATTCACGTCCAAGTCTCAATTCGCGTTGCACATTCGTACGCACGCGGCCGGACCTTGCTACGAGTGTAGCGTGTGCGGTCGCACGTTTGTACGGGACAGCTATCTTATACGTCATCACAATCGCGTGCACCGCGACAGCCACAGTAATATGTCTGCTAATAGTGGTGTCATAAGCAACGCTGGTGGAGCTGGAAATTCAGGCAACTATGACTCGCCAGGCGTCTGCGATTTgagCTTCGTGCCTATGGTGAACCGTTACCTGACGTCACAGGGCACACAAGTGTCGCTTGACGGCTCCACCAAGATGTCAGCCATGTCACCACAGTCCATCGCTTCTATTTCGTCCCCCCCTCCGTCGCACACGCCTACCCCCCAGCCCCAACAGATGACGTCAGGGATGCGACTCTCGGACTGA
Protein Sequence
MFEQQIKAEPMNFYTSHSHINTGPPTIVRSDSHGIIMNQHLPQEDSKDSLIQHQVHQQELLEQHQQDMQHEQDDDDVDNLSFKGMDDEGVEMDMDGRQCSQGMGVDLGSVQTKMEVSNGQGVPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLRALMVKERPYKCDLCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTVVVFDNASEIGWGPPNQGTRAVLRRRRALLAFVCALGAVQGRPFACGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLSCERCSMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRHHNRVHRDSHSNMSANSGVISNAGGAGNSGNYDSPGVCDLSFVPMVNRYLTSQGTQVSLDGSTKMSAMSPQSIASISSPPPSHTPTPQPQQMTSGMRLSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_00430838;
80% Identity
iTF_01205096;