Pmad014359.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- -
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000064.1:3416098-3418287[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-09 4.8e-06 26.1 0.0 2 38 17 53 16 57 0.91 2 2 4.3 4.2e+03 -2.5 0.0 21 30 362 371 362 371 0.82
Sequence Information
- Coding Sequence
- ATGGTTCGGACTTATAAACCAAAAAATACAAGCAGACAAGCTGTGGATGAAAAATCCATGCAGTCAGCAATACAGGATGTTATGCATGGAGTGTTGTCATATAGAAAAGCTGCGGACAAGTACAATTTGAAATTGTCTACATTAGAAAGCCgagtacaaaaatataagaatatcAATGATGCTAAAGGTTCAAGCAAACGTACATTTGACTCTAAATATACAAGTTTTCAAGTCTTTTCTATGGAAGAAGAAAAGCTGctaaatgattatattattaaatgttgtaagaTGCATTATGGACTTACGACGATTCAAACAAGAAAGCTAGCATATGAGTATGCCAAATCTTTGTGTTTGAAATATCCAGCAAAGTGGGAAGAAAATAAGATGGCTGGGAAAGAATGGTTGTATGGTTTTCGTAGAAGAAACCCGGAACTGAGTTTACGCAAACCCGAAAACACAAGCGCTGCCAGGTCTTTTGCGTTTAACAAAATTTCGGTGACCGAGTTTTATACCAACTTGAAGACAGTGTTCGAGCGACATCCATTAACTGCTGACAGAATCTTTAATTTCGACGAATCAGGTGTATCTACCGTTCTAGCTACTCCCAAAGTCTTGGCTTCAAGATATCAAAAACAAGTCGGACAAATTGTATCAGCTGAAAGAGGCGAACTCGTCACTTTTGGTGGCATTATATCTGCCAGTGGAAATACCATTCCTCCACTTTTCGTGTTTCCACGCGTACattataaagataattttCTCGAAGGAGCACCCGAAGGAAGTCTCGGCGCTGCAAATAAAAGTGGCTGGATAAATAGCGATATATTCGTCTGTGTTTTAAAACACATCCAGAAGCATACACTCTGCACAAGAGATAACcctatattattgttatgtgACAACCATGAAAGCCATGTTTCTCTCGAAGCCATCAACTACGCCAAAGTTAATGGCATAATTTACCTATCTTTTCCGCCACATACATCTCAACGCCTACAACCACTTGATGTGGGAGTCTTCGGACCATTTAAATCAAAGTTGAAAATTGCTTTCAACAATTGGCATATGATGAACCCAGGCAAAGCATTgacaatttacaatattccAAAGCTTGtaaaaattgcatttttcGAATCattcacattaaaaaatatcataagcGGGTTTAACAGTCCCGGAATATGGCCTCTTAATGAATTAGCCTTTAGTGACGAAGATTTTGCTCCAACTGAGGTGTATAGATCCGGTAACGTAGAGTATGTGCCTTCTACTCAAAACGTCGTTGAAGATTTATCAGCACCTAATCCGGAGCCAAGTGTCTCCGATATCTGCCAACCCTCTACTTCTGGGACACAGGTTTTTTTGGAGATTCCGCGAGAATCTAAAGATCAAAGTATTAACTCACCGTTGATAACTTATGATAATGAACTACAACTACAAAGGTTTAATTTAGATGcttgtgaaccagatgctttgaataactcaccaatccatcaaatagtagCTCCTTTGAAGACAGTTAATTTGACACCAGAGGCAAATCGACCCTATCCGACtgttgtaagaagtaataaaacaaataaaggacgACGGTCAGGAAAATCACGTATTTATACCGACACACCCGAAAAAAAGCTAATTGAAGAGAAACACAATGTAAAGCAATTGAAAAAGCTAGAACAGGAAAGGAGGGCTAGGGCAAGACAACTGAAACGTAGTTTagatgattttaatttaaaagtgaaGAACAAGAAAGCTAAAAACACAAGAAGTGATGGATCTGATATAAGCTTTCAAGAGAGTTTAACTTCTATCACAGATGAAAATGAAACAGATcatgaaaattttgaaatgaaCAGAAGCCATGTGACAGTTGATGTAATAccagaaaatattaaagacgGTTCGTTTATTTTAGTGAGGTTCcctaagaaaaaaagtattgtttaCTATGTAGGAAAAGTTGTCAGTCACTATAGTCAGTCTGAATTTAAGGTATCTTATCTAAGAAAGAAGCCAGGCTTTGCTCGGACATTTGTTTTCCCTAATGTTAAAGATATTCATACTGTTTATGTAACTGATGTTGAAATGATTCTTCCTGAACCTAAGCCTCCAACAGTTTGTACTTCTAGAACATCAAAACTTTTCACTTTTTcagtaaatttttcaaatcttACTGTTCATTAG
- Protein Sequence
- MVRTYKPKNTSRQAVDEKSMQSAIQDVMHGVLSYRKAADKYNLKLSTLESRVQKYKNINDAKGSSKRTFDSKYTSFQVFSMEEEKLLNDYIIKCCKMHYGLTTIQTRKLAYEYAKSLCLKYPAKWEENKMAGKEWLYGFRRRNPELSLRKPENTSAARSFAFNKISVTEFYTNLKTVFERHPLTADRIFNFDESGVSTVLATPKVLASRYQKQVGQIVSAERGELVTFGGIISASGNTIPPLFVFPRVHYKDNFLEGAPEGSLGAANKSGWINSDIFVCVLKHIQKHTLCTRDNPILLLCDNHESHVSLEAINYAKVNGIIYLSFPPHTSQRLQPLDVGVFGPFKSKLKIAFNNWHMMNPGKALTIYNIPKLVKIAFFESFTLKNIISGFNSPGIWPLNELAFSDEDFAPTEVYRSGNVEYVPSTQNVVEDLSAPNPEPSVSDICQPSTSGTQVFLEIPRESKDQSINSPLITYDNELQLQRFNLDACEPDALNNSPIHQIVAPLKTVNLTPEANRPYPTVVRSNKTNKGRRSGKSRIYTDTPEKKLIEEKHNVKQLKKLEQERRARARQLKRSLDDFNLKVKNKKAKNTRSDGSDISFQESLTSITDENETDHENFEMNRSHVTVDVIPENIKDGSFILVRFPKKKSIVYYVGKVVSHYSQSEFKVSYLRKKPGFARTFVFPNVKDIHTVYVTDVEMILPEPKPPTVCTSRTSKLFTFSVNFSNLTVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034477;
- 90% Identity
- -
- 80% Identity
- -