Pmad014199.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- -
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000064.1:18996-20216[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-06 0.0035 16.9 0.0 2 42 16 55 15 57 0.94 2 2 3.6e-06 0.0035 16.9 0.0 2 42 258 297 257 299 0.94
Sequence Information
- Coding Sequence
- ATGCCGCGCAACTACATTAGAAAGACTACTCGACAAAACTGGAGTGAGACATCGATGCAATCGGCACTAGATGCTGTAAAAGATGGAATGGCTTTCAAAACAGCTAGTAGACAGTTTTCAGTGCCACTAATGGCGTTGAAACGAAGAACCAAAGGAAAAAATAAGCTTGCGATGGGTGCGGTTAAGGTTCTGGGTAGTAAACAAACTGTTTTTACCACCGAACAAGAAGCAGAACTTGTCAAACATATAAAAGACATGGAGATAAGAATGTATGGACTGACAAAAACAGAAATTCTTTCTCTAGCTTATACATTAGCTGAGAAAAACAAGATAAAACATCCATTTTCATCCAAAAGGGAAAAAGCTGGTATTGAGTGGCTAAAAGGATTCCGAAAACGGCATCCAGATATAACTCTTCGTGCTCCGGAATCAACATCAGCCGCTCGAGCACGTGCGTTCAACAAACCTGTtgttgataaatttttttcgaTTTTGAAAGACACACAAGCGAAACATTCTTTTCCACCgtatagaatatttaatgtCGATGAAACCAGTTTATGCACTGTCCCGACCAAAAATACAAAGGTGTTTGCTCAAACTGGTCGTAAACAAGTGGCTAGAGTCACTTCAGCTGAAAGAGGTGACACCACAACAGCAGTAGTTTGCGGCTCTGCTACTGGAAACTTTATACCACCGATGTTCATTGCTTATTTTTTACAGGCCATGCCGCGCAACTACATTAGAAAGACTACTCGACAAAACTGGAGTGAGACATCGATGCAATCGGCACTAGATGCTGTAAAAGATGGAATGGCTTTCAAAACAGCTAGTAGACAGTTTTCAGTGCCACTAATGGCGTTGAAACGAAGAACCAAAGGAAAAAATAAGCTTGCGATGGGTGCGGTTAAGGTTCTGGGTAGTAAACAAACTGTTTTTACCACCGAACAAGAAGCAGAACTTGTCAAACATATAAAAGACATGGAGATAAGAATGTATGGACTGACAAAAACAGAAATTCTTTCTCTAGCTTATCAATTAGCTGAGAAAAACAAGATAAAACATCCATTTTCATCCAAAAGGGAAAAAGCTGGTATTGAGTGGCTAAAAGGATTCCGAAAACGGCATCCAGATATAACTCTTCGTGCTCCGGAATCAACATCAGCCGCTCGAGCACGTGCGTTCAACAAACCTGTTGTTGATAAATTTTTTCGATTTTGA
- Protein Sequence
- MPRNYIRKTTRQNWSETSMQSALDAVKDGMAFKTASRQFSVPLMALKRRTKGKNKLAMGAVKVLGSKQTVFTTEQEAELVKHIKDMEIRMYGLTKTEILSLAYTLAEKNKIKHPFSSKREKAGIEWLKGFRKRHPDITLRAPESTSAARARAFNKPVVDKFFSILKDTQAKHSFPPYRIFNVDETSLCTVPTKNTKVFAQTGRKQVARVTSAERGDTTTAVVCGSATGNFIPPMFIAYFLQAMPRNYIRKTTRQNWSETSMQSALDAVKDGMAFKTASRQFSVPLMALKRRTKGKNKLAMGAVKVLGSKQTVFTTEQEAELVKHIKDMEIRMYGLTKTEILSLAYQLAEKNKIKHPFSSKREKAGIEWLKGFRKRHPDITLRAPESTSAARARAFNKPVVDKFFRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -