Pbra010448.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- nfxl1
- Assembly
- GCA_905147105.1
- Location
- LR989940.1:237521-240588[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 2.2e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 19 0.027 3e+02 1.9 0.6 4 10 169 175 168 175 0.96 3 19 3.1e-07 0.0034 17.6 15.9 3 19 186 202 185 202 0.95 4 19 4.4e-07 0.0048 17.2 14.0 3 18 239 254 236 255 0.92 5 19 1.3 1.4e+04 -3.5 1.3 6 10 280 284 279 284 0.89 6 19 2.2e-08 0.00024 21.3 12.3 1 19 290 308 290 308 0.99 7 19 7e-07 0.0076 16.5 21.5 1 19 343 361 337 361 0.92 8 19 1.2 1.4e+04 -3.4 0.4 7 11 365 369 365 369 0.84 9 19 5.3e-07 0.0058 16.9 16.1 1 18 395 412 395 413 0.97 10 19 2.4e-08 0.00026 21.2 16.9 1 19 422 440 422 440 0.99 11 19 1.3 1.4e+04 -3.5 1.4 5 10 468 473 468 473 0.92 12 19 0.0001 1.1 9.6 5.1 10 19 489 498 486 498 0.90 13 19 0.0039 42 4.6 6.4 4 12 510 518 508 518 0.90 14 19 0.31 3.4e+03 -1.5 3.5 14 18 547 551 547 552 0.87 15 19 0.87 9.5e+03 -3.0 0.3 8 11 568 571 568 572 0.78 16 19 0.001 11 6.4 3.9 1 11 588 598 588 599 0.95 17 19 0.00032 3.5 8.0 15.6 3 18 629 645 628 646 0.83 18 19 0.19 2e+03 -0.8 1.3 5 10 663 668 663 668 0.94 19 19 0.00056 6.1 7.2 10.6 1 16 687 701 687 706 0.92
Sequence Information
- Coding Sequence
- ATGGCACGGAGATACCGGGATGCTGCTGCAAAGCTGCAGCAAAATATACACAAGCACTTAAAGGAAATAAAAGATCTTTCATCATCTGAAGATGAAGAGCCATATGAACCTAGTGTTCTGGAGGGTGTTTTCCAGAGTTACTGGCGAGGCGGTGGTGATACGCACATGACTAACAGGACAAGAAATCTTCTAGAAGAAGCTCTAAGCGGTCGGTCTGTTACTTGTTTAATTTGCATTGGATCTATTAAAAGAGCCGACGCTATCTGGACATGTGACCACTGCCATTCTTACTTTCATCTATCTTGTATTCAAAAATGGGCTAATGATAGCATAAACTTACGTTCCGAAGAAATCCAAGCTCCAATTGTCATTGTCAAGCGAAAAAATATTGAGTGGTGTTGTCCCAAATGTAGGACAACATACAGTAAAGAGGAAATTCCACACAAGTATCGTTGTTTTTGTGGAAAAACTGATGATCCACCATACCACCCTTGGTTAGTGCCTCATACTTGTGGAGAAATATGTGGGCGAAAAATTTCATTTGGTGACAATTGTAAACATAAATGCCTATTACTGTGTCATCCTGGTCCATGCCCTCCGTGCCCTCAAACAGTAAATGGAATATGTTACTGTGGAAATGAACAGAAAAGAGTTAGATGTAGTGCACCTAAATGGTCTTGTGGTGAAATATGTAGTAAATTACTTCCTTGTAGGTCTCATAAGTGTGAAAACATTTGTCATGAAGGTGATTGCTTGCCTTGTCATTACACAAGTCTACAGCTTTGTCTCTGTGGCTCAGAAACAGCAAAACGACCATGTACTGATCTAATTTGGCAGTGTTCGAAAGTTTGCAATAAAAAATATTCATGTGGATTTCATAATTGTTTGGATACATGTCACTCTGGGTCCTGTGGCCCTTGCCCAAATTCTGGCCTCAGGACTTGCCCTTGTGGAGCCATTCAACAGCATGTACAATGTCCTGATTCTATAGAAACATGTCTTAGTACCTGTGGAAAAAGGCAAGAATGTTGTGAACATACTTGTCCCGAAAAATGTCACAAGGGACCATGTCCACCATGTCAAGTGATGGTTGAAAAGAAATGCCATTGCTCTACACATGAACGATCATTACCATGTAGTAAAGACTTTAGATGTGATACCAAATGTAGAGGTATTAGACCTTGTGGAAAGCATGTTTGTGCTCGTAAATGTTGTAGTGGTAACTGTCCTCCTTGTGAAAAACTTTGTGATAAACCATTGCAATGCGGCCGTCACAAATGCACAACAATTTGTCATCATGGTCCTTGTTATCCTTGTCCAAGGGAATCAAAAATTATGTGCCGTTGTAAAGAAACTTTTATCACTGTTCCATGTGGCAGAGAAAAATATGTAAAGCCCCCTAAATGTAATAGAAAATGTAAAATTAAATATAAGTGTGGACATATTGAAGAAAACAAACATTTCTGCCATTTCGGTGACTGTCCTCCTTGTAAAGCGGTGTGTAACAAATCTTACGAGAAATGTGATCATAAATGCAAGGCCCTATGTCATGAATATGTTAATGTTGTATTTAAACAAGTTGAAAAGCCAGCAACACCTTGGGAAGTTCAGCCTCCGAAGACAAAAGTTGTAGCTTTGGATTGCCCACCTTGTGAAGCTCCTGTAACAGTTATATGTTTTGGAGAACATGATTCTGAACTGCAGCCCTGCCACTTAGCATCACGCCGCTGCTGTGGGCGGTACTGCAACAAAGACCTGGATTGTACCAATCATAAGTGTTTACTACTATGTCACTTATATAGCCCTGATTCTAATTACCCAAATGTGCCTTCCTCATGTAGACAATGTGATAGGGAGTGTTCTGTGCCTAGACCAGAAGAATGTACTCATAAATGTCCTAACCGTGCTTGTCATCCTGGACCTTGTCCATCATGTGAGGTATTAGAACGAATTAAATGCTTTTGTGCTGTTACAGATATATATTTACGTTGTCAAGAGCTATGTACGGCAAATGAAGACACATTAAGCTGCAAGCAACAATGTCCTAAAAATTTACCATGTGGACATAGGTGTAAAAAATACTGTCACAAAGATAGCTGTGGAGAGAATCAAATCTGTGTGAAAAAAACGAAAATATACTGTTCTTGTGGTAATTTGAAGAAAGAAGCATCTTGTAATTTGGTTCGATCATCTGAAATTAAAGTTGACTGTGACAGTACTTGTGAAGCTAAGAGGTTGGCAGTTAAATGTGAGAAAGAAAAAGAAGAAAAGCGATTGAAAGAGTTAGAAGAGGAAAGAAATCGCAAAGAACTTGCAGAATATGAATGGAAACTGAGCAGAAACAAGAAAAAACACAGAGAAAAGAAAATGATTATCAATGAAGACAATCGAAATTTTTTACAAAAATACTGGGTTCCTATTGTAACTATTGTAATTGTAATTTTGTCAGGAGTTCTATATACTATAAATTTTTCAGAGGTGTAA
- Protein Sequence
- MARRYRDAAAKLQQNIHKHLKEIKDLSSSEDEEPYEPSVLEGVFQSYWRGGGDTHMTNRTRNLLEEALSGRSVTCLICIGSIKRADAIWTCDHCHSYFHLSCIQKWANDSINLRSEEIQAPIVIVKRKNIEWCCPKCRTTYSKEEIPHKYRCFCGKTDDPPYHPWLVPHTCGEICGRKISFGDNCKHKCLLLCHPGPCPPCPQTVNGICYCGNEQKRVRCSAPKWSCGEICSKLLPCRSHKCENICHEGDCLPCHYTSLQLCLCGSETAKRPCTDLIWQCSKVCNKKYSCGFHNCLDTCHSGSCGPCPNSGLRTCPCGAIQQHVQCPDSIETCLSTCGKRQECCEHTCPEKCHKGPCPPCQVMVEKKCHCSTHERSLPCSKDFRCDTKCRGIRPCGKHVCARKCCSGNCPPCEKLCDKPLQCGRHKCTTICHHGPCYPCPRESKIMCRCKETFITVPCGREKYVKPPKCNRKCKIKYKCGHIEENKHFCHFGDCPPCKAVCNKSYEKCDHKCKALCHEYVNVVFKQVEKPATPWEVQPPKTKVVALDCPPCEAPVTVICFGEHDSELQPCHLASRRCCGRYCNKDLDCTNHKCLLLCHLYSPDSNYPNVPSSCRQCDRECSVPRPEECTHKCPNRACHPGPCPSCEVLERIKCFCAVTDIYLRCQELCTANEDTLSCKQQCPKNLPCGHRCKKYCHKDSCGENQICVKKTKIYCSCGNLKKEASCNLVRSSEIKVDCDSTCEAKRLAVKCEKEKEEKRLKELEEERNRKELAEYEWKLSRNKKKHREKKMIINEDNRNFLQKYWVPIVTIVIVILSGVLYTINFSEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204545;
- 90% Identity
- iTF_01204545;
- 80% Identity
- -