Basic Information

Insect: Pieris brassicae
Gene Symbol: -
Assembly: GCA_905147105.1
Location: LR989939.1:10193074-10196957[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.5 1.3e+02 3.6 0.8 1 23 393 418 393 418 0.83

2 8 0.1 8.7 7.3 1.4 2 23 447 469 446 469 0.91

3 8 0.37 30 5.6 1.2 2 23 490 511 489 511 0.96

4 8 0.00044 0.036 14.8 0.4 1 23 515 537 515 538 0.95

5 8 0.016 1.3 9.9 1.5 1 23 542 565 542 565 0.92

6 8 0.52 43 5.1 0.1 3 23 572 592 570 593 0.87

7 8 3e-05 0.0025 18.5 2.2 1 21 600 620 600 621 0.94

8 8 1.4e-05 0.0012 19.5 2.3 1 20 624 643 624 645 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.5	1.3e+02	3.6	0.8	1	23	393	418	393	418	0.83
2	8	0.1	8.7	7.3	1.4	2	23	447	469	446	469	0.91
3	8	0.37	30	5.6	1.2	2	23	490	511	489	511	0.96
4	8	0.00044	0.036	14.8	0.4	1	23	515	537	515	538	0.95
5	8	0.016	1.3	9.9	1.5	1	23	542	565	542	565	0.92
6	8	0.52	43	5.1	0.1	3	23	572	592	570	593	0.87
7	8	3e-05	0.0025	18.5	2.2	1	21	600	620	600	621	0.94
8	8	1.4e-05	0.0012	19.5	2.3	1	20	624	643	624	645	0.95

Sequence Information

Coding Sequence: ATGCCTTCAGAAAAAAGTTGTTGTGTATTAAAATGTGGAAGCTCTCGTCAACAAAGCGATATAATTTTACATTCTTTTCCTAATCCTGAAAAGGATATGTTTCGGTTCATGGCTTGGTTCCAAGCAGCTGGCCTTGATACATCATTGGATGCACATTATGTTTTCAAATATCGCAAAATATGTCACATACATTTTGAATCAAAAGATTTAACTTGGACCAAGAGGTTAAGCCCCGATGCTGTGCCGAGATTGTTATTACCAGGTCCTAAATTATTTGGTAATGATAATGGTCCCATTCTAGCTCCAACAAGCAAACTAAAAAATGTGCAATTGGATTTTTCTACTCCTTCAACCTTAGAAGGTAATATGCAACTTAAAAATAAAAGTATATCTAAACAAGTGGGTCTATTAAATGTGATATATACAAGGCCACCCCTAGTCAAAGAAGAAATTTTAAATCGCTGCAGATGTTGTTTGGATAATGTAGATTTACATCTCATGTGGGAGGAGATTCCCAACAACGACCAAGCCGATTCTTATGGTAATATGTTAATAGAGTGCTTTTCATTACCATGGTTAACAAAAAATGAAGGTGATCAGCTGGAATATATTTGCAGCTCATGTGTGGATAGATTACAGAGTGCTTTGGATTTTAAGAAAGAGATAATTGCTTCTGAGCAGGTTCTTAAAGGTTTTTTATTCCAATCGGACATACAAATTGAAGTTTTCACAGAAGAAGATTCAATTTTTGCCAATAATGACTATATAGAAAACGTGGATATTAAGACTGAAGTTTCAGAAGGAGAAATATCTGCTTTAGATAAAGAAAATAGTGATCAAACAGATCTTGGATCAACACAGAAACGAAAGTGGCCTAAAAAGAGAAAAGGTGCTGACCGTTTAAAAGCTTACAAAAAATATACACAGTTGGATTTACGAGAAGCTATTGTGTCTGTGAGAAGTGAAAACATGACATTTAAGGAAGCTTGTGCTGAATACAACATTCCCCGGAACACACTCAAAAGCCATCTAAGAAAAGCAGATATTATATCTGAAGATCATAATGTTTCATGTGAAGATAAGAGCAATAAGGAAAAAAACTTTAGACGAATTGAAGAAATAAAAATGATATTAAAGTATACAAATGCTATACCATTTAAAACAAAATCTGCAAAATACTACTGTGCATATTGCTCAACCAGTGGTCCCATGTTTCAAGATGCAGATGAATTAAGAATCCACACAAAGTTTCATGAAAAAGAACGACTAGAGGAAGTGGATCATTTCATGAGACCCTATTGGCTTAATGAAATTTTGAAGCTTGATGTCTTGAATTTAACTTGTACCATATGCAATACTAAACTTCCAGACTGGAATCAAATGTTCCATCATTTTGACTCGCAACATGGCATTGAATTTGATGAAGCATACACTAAAGTTGTGCCTTATAATCTATCTGAGCCAATGCAATGTGTGTTATGCCATGATGAATTCCCAAATTTTCACAACCTTGATGGCCATATGAATGCCCATTACAATAATTACATATGCCCAACATGTGGGGATACGTTTGTTGCAAATAGTCGTTTAGAGAAACATTTACAAGTACATCATCAAGGGGAGTTTCAATGTGAAGAATGTAAAAGAGTATTCACTTTAGACAAATATCGTGCTAAACATTATAAATTGGTTCATAAAAGAAGTACCATAAGGTGTATATTATGCCCAGAAGTATTTAACACAGTTTCTGAACAGAATGCACACTTAGTTGAACATCATAAAGACAATACTAATGTATACATTTGTGAGTACTGTGGTCGTTCATATACCCATAGAAAAAATTTCCTGAAACATCTAAGTAGGAAGAAATATAAGTGTGAGGATTGTGATAAAAGATTTTCCAGTTTTAAACACTTAAAAACACATAAAGTAATATGTGAAACATAA
Protein Sequence: MPSEKSCCVLKCGSSRQQSDIILHSFPNPEKDMFRFMAWFQAAGLDTSLDAHYVFKYRKICHIHFESKDLTWTKRLSPDAVPRLLLPGPKLFGNDNGPILAPTSKLKNVQLDFSTPSTLEGNMQLKNKSISKQVGLLNVIYTRPPLVKEEILNRCRCCLDNVDLHLMWEEIPNNDQADSYGNMLIECFSLPWLTKNEGDQLEYICSSCVDRLQSALDFKKEIIASEQVLKGFLFQSDIQIEVFTEEDSIFANNDYIENVDIKTEVSEGEISALDKENSDQTDLGSTQKRKWPKKRKGADRLKAYKKYTQLDLREAIVSVRSENMTFKEACAEYNIPRNTLKSHLRKADIISEDHNVSCEDKSNKEKNFRRIEEIKMILKYTNAIPFKTKSAKYYCAYCSTSGPMFQDADELRIHTKFHEKERLEEVDHFMRPYWLNEILKLDVLNLTCTICNTKLPDWNQMFHHFDSQHGIEFDEAYTKVVPYNLSEPMQCVLCHDEFPNFHNLDGHMNAHYNNYICPTCGDTFVANSRLEKHLQVHHQGEFQCEECKRVFTLDKYRAKHYKLVHKRSTIRCILCPEVFNTVSEQNAHLVEHHKDNTNVYICEYCGRSYTHRKNFLKHLSRKKYKCEDCDKRFSSFKHLKTHKVICET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01202403;
90% Identity: iTF_01202403;
80% Identity: iTF_01202403;