Basic Information

Insect: Pieris brassicae
Gene Symbol: -
Assembly: GCA_905147105.1
Location: LR989944.1:6811521-6816169[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.034 2.8 8.8 0.0 2 23 198 219 197 219 0.96

2 12 9e-06 0.00075 20.1 2.9 1 23 225 248 225 248 0.97

3 12 6.9 5.7e+02 1.6 0.6 2 19 263 277 262 284 0.54

4 12 0.0035 0.29 12.0 3.2 1 23 503 525 503 525 0.98

5 12 0.32 26 5.8 2.7 2 23 531 553 530 553 0.94

6 12 0.00011 0.009 16.7 1.6 3 23 563 583 562 583 0.96

7 12 5.1e-05 0.0043 17.7 0.4 2 23 587 608 586 608 0.96

8 12 0.02 1.6 9.6 0.4 2 23 621 643 621 643 0.96

9 12 0.0008 0.066 14.0 1.9 1 23 649 671 649 671 0.97

10 12 0.28 23 6.0 6.8 2 23 678 699 678 699 0.97

11 12 5.1e-05 0.0042 17.7 3.5 1 23 705 728 705 728 0.97

12 12 0.51 42 5.1 3.5 1 23 732 755 732 755 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.034	2.8	8.8	0.0	2	23	198	219	197	219	0.96
2	12	9e-06	0.00075	20.1	2.9	1	23	225	248	225	248	0.97
3	12	6.9	5.7e+02	1.6	0.6	2	19	263	277	262	284	0.54
4	12	0.0035	0.29	12.0	3.2	1	23	503	525	503	525	0.98
5	12	0.32	26	5.8	2.7	2	23	531	553	530	553	0.94
6	12	0.00011	0.009	16.7	1.6	3	23	563	583	562	583	0.96
7	12	5.1e-05	0.0043	17.7	0.4	2	23	587	608	586	608	0.96
8	12	0.02	1.6	9.6	0.4	2	23	621	643	621	643	0.96
9	12	0.0008	0.066	14.0	1.9	1	23	649	671	649	671	0.97
10	12	0.28	23	6.0	6.8	2	23	678	699	678	699	0.97
11	12	5.1e-05	0.0042	17.7	3.5	1	23	705	728	705	728	0.97
12	12	0.51	42	5.1	3.5	1	23	732	755	732	755	0.95

Sequence Information

Coding Sequence: ATGATGGAGCCTGAAACTGACAAAGAATTAAAGATATATTCAGAAATACAGAGACCAACTAAATATTTTTATACTCCAAAATTCGAAGCTAAAGACACATTAACTTCGAAAGATGCCGTTAAATTTCTGCTTGATGGCACTTTAAGATTGCGAGTATGCAAATATTGTTTAAATATAACTCAAAATTTAAATGAACTGGATGAAATAATTGTAGTGGCGGGAAAATGTGGGCTTTACGAAGTCACTATTAATGATATTGTAACCAGTTTTTATCCTGTCAAGGTTAACTGTGATACAAATTTTCCAAATAAGATATGTAGTGACTGCTTAGACAGAGCTTTTCAATGCTACTTTTTCACCCAGCAATGTGAACAAGCTGGAAGGGCCTTACATAATTACTTAGAAGATTTAAATGAAAAGTTTAATAAACTAGATCCAATGGAGCCTCTAAAAAGGCGTGGCAAACCTAAACTTTATCTTAATCACAATGTACTTAATATGGAATGTAAAAATGTTATAGATTATGCGGAACCTCTCATAAATCTCATAAATTTAAATGCTCTTCCAAATGATTTGGAACTGACTGACTTAGAATGTCCAAAATGCTGGCAAGTGCTTCCAAATATAACATCTCTAGTTAACCATGAAAAGTCTCATCCAAAATCAATGTGGTATTATTGTAAACAGTGTGGAAAAGCTTTTGTTAAATACACCCAATTAAAGAAACACAAACGAAATGAGCATTCACAAAAAATTGAAGATATCAATTTAGAAAAAATAATATTTGCATGTAAACAGTGTGGTATATCTAATGAGTCACTATCAAAACATTTACTACACATAGAAAAACATAGTTTTACAAAGACATTGAGTGAATTGATAATGAATCCAAAAGGCAATTGTGCCATGTGCTTTAACAAGGCTTACAATATGGTTCATCTTAATGAGAATATGCATATGCATGGTGGTGGAGCTGGACTAACGGGAGAGAAAAGTATTTCTAATATTGTTACTTCAGTGTTCCCAGATATTACATTACACTACTCTCTTGAAGATAAAATTTGCAAACATTGTCTAAATAAACTTATAACATCTTACATCTTTATACTAAATGTTAGAAATAATAGAAATAGACTTGATGAATGTGTAGGTACTATGGTAGAAACCTTAAAGCATGTTGACGAAAATAAAAATATTTTAATTGAAGTTAACCAAAATGTAGTTTTCCCAGCAATTAGGGAAGACTTACTAGTAAAAGACGATGCAGAAGAATTTTTAGAAGATGAGTTTAGGATTCCGGATTCAGATACGGATAGTGATGCTAAAAGTACCCATAGTACTTCAACAGACGATATTATTAGAGATAATCCAGCTCGTAATGCCACCAAAACATATGCGAAAAGATTTTCCATAAATGGATTTCAACAGTCAATGCCTATTGATAAAAATTTAGTTGTGAAAACAAATGAAAGAAAACAAAAGTGTCTCAAAAAACGGTTACAGAAATTTACATGCCCTTTATGCTATAGGCACTTTGTGTCAGATTATTTTCTTAAAAAGCATGTAATAAAGCATGTTTATGAAACAACAGAGTGTAGTTTGTGCAACGAAAACTTTAAATCTAACTTTGACTGTACTGAACATAAAAAAGTTGTTCACACACTCAATTTAAAAACATTTGCCAGTTGTGGCATTTGTGGTAGATCTTTTAAAAATATGGACAAATTGAAAATGCATTCCAAAAAACATTCATTTGTAGAATGCCCGCTATGTAATAAAATTTTCAAATCTCAACCATTTTTTGAAAAGCATATGGTGAGACATCAGAGGAAATTTAATAGTAATAGAAAGCATATTGAAACTTGTAGTTTTTGTGAAAGAGATTATTCAAATGAAAATGAACTCTCACTACATGTAAACAAGGTCCACCTCCAAATCAAACCTTATAATTGTGACATGTGTGAAAAACAGTTTTACACAGAACTTAATTTACGAAGTCATAAAAAATTGCATAACGTTAAATCCAGAGAGGAGTGCACATTTTGTCATAAAACATTCATGTGTAGAAAATCACTTGTTATTCATTTGCGAAAACATATTGACATTAAGCCTCATTATTGTCCAGTGTGTTCAAAATCTTTTTATAGCGAGTCAAGTATGAAATATCATATGAAAAAATTGCACGGAGGAAGATATTGCTGCAGGCTTTGCAAACATATAGTTAATAGTAACATTGATTTAAAAAATCATTTTAAAGTAGCACATACATATAAGCAATTGAGTTAG
Protein Sequence: MMEPETDKELKIYSEIQRPTKYFYTPKFEAKDTLTSKDAVKFLLDGTLRLRVCKYCLNITQNLNELDEIIVVAGKCGLYEVTINDIVTSFYPVKVNCDTNFPNKICSDCLDRAFQCYFFTQQCEQAGRALHNYLEDLNEKFNKLDPMEPLKRRGKPKLYLNHNVLNMECKNVIDYAEPLINLINLNALPNDLELTDLECPKCWQVLPNITSLVNHEKSHPKSMWYYCKQCGKAFVKYTQLKKHKRNEHSQKIEDINLEKIIFACKQCGISNESLSKHLLHIEKHSFTKTLSELIMNPKGNCAMCFNKAYNMVHLNENMHMHGGGAGLTGEKSISNIVTSVFPDITLHYSLEDKICKHCLNKLITSYIFILNVRNNRNRLDECVGTMVETLKHVDENKNILIEVNQNVVFPAIREDLLVKDDAEEFLEDEFRIPDSDTDSDAKSTHSTSTDDIIRDNPARNATKTYAKRFSINGFQQSMPIDKNLVVKTNERKQKCLKKRLQKFTCPLCYRHFVSDYFLKKHVIKHVYETTECSLCNENFKSNFDCTEHKKVVHTLNLKTFASCGICGRSFKNMDKLKMHSKKHSFVECPLCNKIFKSQPFFEKHMVRHQRKFNSNRKHIETCSFCERDYSNENELSLHVNKVHLQIKPYNCDMCEKQFYTELNLRSHKKLHNVKSREECTFCHKTFMCRKSLVIHLRKHIDIKPHYCPVCSKSFYSESSMKYHMKKLHGGRYCCRLCKHIVNSNIDLKNHFKVAHTYKQLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01206923;
90% Identity: iTF_01206923;
80% Identity: -