Pbra019987.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- -
- Assembly
- GCA_905147105.1
- Location
- LR989941.1:4450566-4454065[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0009 0.075 13.8 1.6 2 23 105 127 104 131 0.94 2 10 2.4e-05 0.002 18.8 4.1 1 23 154 177 154 177 0.97 3 10 0.0028 0.23 12.2 1.7 1 23 183 205 183 205 0.97 4 10 1.5 1.3e+02 3.6 1.5 2 20 205 223 204 225 0.91 5 10 0.18 15 6.5 0.9 1 23 233 255 233 255 0.98 6 10 0.00043 0.036 14.8 1.9 1 23 259 282 259 282 0.97 7 10 3.1 2.6e+02 2.7 0.1 1 9 297 305 297 315 0.90 8 10 0.38 31 5.6 0.7 1 23 331 353 331 353 0.96 9 10 9.9e-06 0.00082 20.0 0.8 1 23 431 454 431 454 0.98 10 10 0.32 27 5.8 0.2 2 19 466 483 465 486 0.92
Sequence Information
- Coding Sequence
- ATGTCTATATGCCATAATGGATACTACGAAAGTCCGAATACATCAGGGACTGGGGTGACGATTTCAGGCGCCAATTACATTCAAGAAAACTCATTTAGTTTCGAAAAAATACCTCAGGTTTGCCTAGAACGTATCAATATTTCAAAGTATGTAAAGTCACTAGACCCCAATATCGAAACCAGTAAGAATGATATTCCAAATGCTGAAAATCTTAACAAGTTGGCAGAATTCACTAGGAATTGCTCAGTGCGACTTGTTCGCAATGATTTAAAGGCGTTAAGGGACTTATTGTTTAAAAACTTGCACAATCTGAAATGTGACATTTGTGCTAAGGTTTATACTAGTGAGAAAAAGTTAAAAAAGCATAAAGAAAATAAACATTTGCTTGTGCATCAGGAGAAAGCACTGAAGCGAGTCTCATTTTCAGAAAAAGTTATTGTTCATGAAATCAATGAATATCATCGGTGTAGAAAGTGTTCAAAGATATTTGAACAATATTCAACTTTAAAAGTTCATATGAGGCGTGAACACAAAAAGCGTAAGTGCTACATTTGTTATTATTGCACTATGAAATTTGTTGATCGCATGTTCTTTAAAGTACATATTAAACTACATTGTGATGTTTGTGGTCATTTTATGGTGAATAAACACAAATTGATGGAACATAAACATAATGTTTGTAAAATGGTTCAAGAATACAAATGTAAAAGATGTGAGGATATATATTATTCATTTCTGGCTCTCCAAGATCATATGTCCAGTCATGGGACAGCATATGTTTGTGATATTTGTAAAAAACAATTTGAAAGTAAATGCAGACTTGCATACCATATAAAAATCTTACATTCAAAATGCTTGATGGACTTATATACATTTAATTTGGGGACATATCAATGTAACTTTTGCCATGAGAGTGCGGTAGAACGAGATATAATAGAAAAACATGTTTTGCATCTTACAGAATTAAATAAAACTCTATCCCAGAGAAAGTATATCTGTGATCACTGCCTAGCTATATTTTTGTCAGAAACTGAATTATTAAAACATAAATTGTCTCATTACTGTGATTTACCTGAAAAGCCCAATTATGAATCAAAGATTGAATTTAAGTTTAAAGTTGGAGACCCATTGCCAGATCACTTTAAGCCAGTAATTGTTATAAATAGAATTCAAATTCCTGAAAAATGGGCAGATGAATCACTGGATTATATAGAAATACCAAATGGTTTGGATGTGGATCATAAAAAGGCTCTTATTGATCAAAAATCAAAGAAAACACTTTTTTCAAAATATCAATGCACAATTTGCACAAGGTACCTCTCAAATAGCTACGGCCTAAAACGCCACATGGCAACAGTACATAAAGATACAGAACAGAACTATACAGATGATCTCAAATGTTATACCTGTGAAGAGGTGTTTGCGTGGCCGTCGCTACTACAGTCACACAATTGCATCCGGAATAATATACCAGACCCACAGTTTCGTGATGCGAGGCCAGAAATTGAACTACAAGAGAGTGACGATTATTTTGAAATCCCACCACCCATAGTGGAATTGACAGTTTATGATGAGTGTGTTATTCTGCCTATGAAAATGTCTAATGGTAACTCATACAAAATTGTCATGGAGGAAGTTCCTATAGAATTCTAA
- Protein Sequence
- MSICHNGYYESPNTSGTGVTISGANYIQENSFSFEKIPQVCLERINISKYVKSLDPNIETSKNDIPNAENLNKLAEFTRNCSVRLVRNDLKALRDLLFKNLHNLKCDICAKVYTSEKKLKKHKENKHLLVHQEKALKRVSFSEKVIVHEINEYHRCRKCSKIFEQYSTLKVHMRREHKKRKCYICYYCTMKFVDRMFFKVHIKLHCDVCGHFMVNKHKLMEHKHNVCKMVQEYKCKRCEDIYYSFLALQDHMSSHGTAYVCDICKKQFESKCRLAYHIKILHSKCLMDLYTFNLGTYQCNFCHESAVERDIIEKHVLHLTELNKTLSQRKYICDHCLAIFLSETELLKHKLSHYCDLPEKPNYESKIEFKFKVGDPLPDHFKPVIVINRIQIPEKWADESLDYIEIPNGLDVDHKKALIDQKSKKTLFSKYQCTICTRYLSNSYGLKRHMATVHKDTEQNYTDDLKCYTCEEVFAWPSLLQSHNCIRNNIPDPQFRDARPEIELQESDDYFEIPPPIVELTVYDECVILPMKMSNGNSYKIVMEEVPIEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206106;
- 90% Identity
- -
- 80% Identity
- -