Pbra019496.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- -
- Assembly
- GCA_905147105.1
- Location
- LR989941.1:4315871-4320726[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.89 74 4.4 1.3 5 23 243 262 241 262 0.93 2 10 0.042 3.4 8.6 3.1 1 23 269 291 269 291 0.98 3 10 3.8 3.1e+02 2.4 5.4 1 23 321 344 321 344 0.95 4 10 0.03 2.5 9.0 4.3 1 23 347 370 347 370 0.94 5 10 0.0003 0.025 15.3 2.3 3 23 375 396 373 396 0.95 6 10 0.0015 0.13 13.1 0.2 2 22 410 430 409 434 0.92 7 10 9.1e-07 7.5e-05 23.2 0.2 2 23 443 465 442 465 0.94 8 10 0.017 1.4 9.8 4.8 1 23 471 494 471 494 0.94 9 10 4.3e-05 0.0035 18.0 1.7 3 23 505 525 504 525 0.98 10 10 0.00028 0.024 15.4 0.6 1 23 531 554 531 554 0.98
Sequence Information
- Coding Sequence
- ATGGCAGATGTTAAGATGAAAGTAAGTTTTCGTAAAGGTGTCTGCAATGGATGTTTAAGTCTAGATCGAGTTACAAGTTCTATTGAAAAACAGGATCTTTTTATAACGTTACTATCTAAGGAAACACAGTATATGGAGCCTAAGTACTTAAGTATCCAGCTTTGTTGGGAATGTAAATCAATGTTGCGAAAAATAAGTCTATTTCAACAAAAAATTTGTGAAGCACAATATATATTACAAAATTCCATTAGTTTGGATCATAATACATTTATTTCAACAACAGTCTCATTGTCTACATTAAGCACATCATACAACCCAGAATATGATTATATAATAAGTCATGATGAAGCTGAAAAGGAGTCATTAAATTTACCAGAACCTTTACTTGTTGATACAATAAAAGAAGAAATTGAAGTGTTTCCAGATACCCTTAATGATAATGACTATGACAATGATTTTGATAGTAATGATTATATGAATAATTGTGATGTAAATGATGTAAAGAATGAAAGTCATATTGATAACAGAAAAGATGTACAAAGTAAAGAGAAACAAAAGCAATGTGGCAAGTTTGAGAGGAGAGCAATTGTTACAACATTTGATATAGATTTAAAAAGTCCACAGAAATATTATGATGAAGTTAATGTAAGTAACAATGACATTTTGCAAATATTGGATAAAGAGAGGAGCTCTACAAAAAGTTTAACAAAATACAGAATAAAATGTGAGTGTAAGAATAGATTTAAGAAATTGTTAGATATGAAACGACATATGGATATTGATCACTTAAAGCCGAATCCACCATATAACTGTTCTGAATGCTCTCAAATGTGTGAATCTATTACTGAACTACACAGCCACTGGCAGACACACAATCTTTTATATAAATGTATGTTTTGCTCACAATATTTACAAAACATCACAGAAATAAAATGCCATTTAATGAATCACACCAAGTTGTATACATGTAAAAAGTGTACAATACAAAGTCATTCTTCACAACTTTTTAGAGAGCATTATACAAAGTATCATACAAAATTCATATGCGATTATTGTGAAAAAGTATTTCATTGTAAAAGACTTCTTGAAAAACATATTGTAAAAACTCACTTCCCTTCAATATGCCAGGTCTGCAACCGAATGTTTAGCAAATACCATTCGTTAGAGGTGCATTACCGAAACTTCCATCCAGAATTAATATACAAAACGGTCAAGCGCGAGTTGTCATACTGCGTTGAGTGCGACCGACAATTTCCAAGTCAATATGTATATAAACGACACTTGAAGACTGCAGCCGCGCATGTTCAGAAGAAAACTATTAAAATTCCATGTCCGGAATGTGGAAAGGTATTCTCCCGTAAGGCGTATATGAAGAACCATTACAAGTTGGTTCATGTTAGATCGTCATCGCATTACTGTGAGATTTGTAGTAAGCATTTCATTAGCGGATTTTCACTTCGCACTCACAGGAAGTTTGTACACGAAAAAACTGCGAAGCCGAAAGATAAAATTTGTGATGTTTGTGGACGAGGATTTCATACAAACCGGACGCTTATAAATCACACAAGGACGCACACAGGTGAGCGACCATACAAGTGTTCGTACTGTCCTGCAGCGTTTGCACAGTCGTACGCTAGAAAAACGCACGAACGGTCGCAACACAAACATCTCTCAGACGCAATTATCATTTACAGTTGA
- Protein Sequence
- MADVKMKVSFRKGVCNGCLSLDRVTSSIEKQDLFITLLSKETQYMEPKYLSIQLCWECKSMLRKISLFQQKICEAQYILQNSISLDHNTFISTTVSLSTLSTSYNPEYDYIISHDEAEKESLNLPEPLLVDTIKEEIEVFPDTLNDNDYDNDFDSNDYMNNCDVNDVKNESHIDNRKDVQSKEKQKQCGKFERRAIVTTFDIDLKSPQKYYDEVNVSNNDILQILDKERSSTKSLTKYRIKCECKNRFKKLLDMKRHMDIDHLKPNPPYNCSECSQMCESITELHSHWQTHNLLYKCMFCSQYLQNITEIKCHLMNHTKLYTCKKCTIQSHSSQLFREHYTKYHTKFICDYCEKVFHCKRLLEKHIVKTHFPSICQVCNRMFSKYHSLEVHYRNFHPELIYKTVKRELSYCVECDRQFPSQYVYKRHLKTAAAHVQKKTIKIPCPECGKVFSRKAYMKNHYKLVHVRSSSHYCEICSKHFISGFSLRTHRKFVHEKTAKPKDKICDVCGRGFHTNRTLINHTRTHTGERPYKCSYCPAAFAQSYARKTHERSQHKHLSDAIIIYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206090; iTF_00879163; iTF_01205277; iTF_01206941; iTF_01204437; iTF_01203615;
- 90% Identity
- iTF_01206941;
- 80% Identity
- -