Pbra001534.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- -
- Assembly
- GCA_905147105.1
- Location
- LR989934.1:18538785-18547539[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.8e-05 0.0057 17.3 5.0 1 23 272 294 272 294 0.98 2 11 0.078 6.4 7.7 0.7 1 23 298 320 298 320 0.93 3 11 0.0051 0.42 11.4 2.0 1 23 325 347 325 348 0.96 4 11 0.016 1.4 9.8 1.0 1 23 352 375 352 375 0.95 5 11 0.03 2.5 9.0 0.7 3 22 392 411 390 415 0.91 6 11 0.0049 0.4 11.5 1.8 1 23 421 444 421 444 0.93 7 11 0.14 12 6.9 1.4 2 23 495 518 494 518 0.97 8 11 0.0011 0.088 13.6 3.7 1 23 530 552 530 552 0.97 9 11 0.00015 0.013 16.2 0.8 1 23 558 581 558 581 0.91 10 11 0.00035 0.029 15.1 1.1 1 23 587 609 587 609 0.98 11 11 0.0015 0.13 13.1 0.6 1 23 615 638 615 638 0.91
Sequence Information
- Coding Sequence
- ATGGAATCGCTCAAATGTTGTAGAATTTGTCTTGAAGTGGATGGATTCATGCATAATTTGTCTTCGAATACCTTGGCTTTCTACTATTTGACATTGACCGGCATAAATCCTCTGCCGAAGCTGAAAATACCAATGTATGTATGTTATGAATGTACTGCTCTATTGAAGAAATACTTTGTATTTAGACAAAAATGCCTTCGTGGTCAGGCAGTGCTCCAAGCACTTTTATCAAATAATGGGGAGGTAACAGAAGAAAACTTAAAGGACATAGGCAGAGAAAGTTTTGGCCTAACCTCAAGTCTAAAAATTGTTGAAAATGTCAGTTTTAATTATGACCCACAAGCTGACTTAAGAAAAACTTATGATCTACCAAATATTATAAAAGAAGAGGATATTGTAAAGTTAGAGCATGATTACTTTTGTGAAGTACAAGATGATTCTAGTGACCCCATTGATGTAAATAATTCAGAAGATAATGACTTAATTGAAATCCTTGAAGATGATCTAGATGCAGACCATTTGGATGAAAAAATGGAGCAGCAATCATTCGAACAAATTATGCTTCAAGAACCAGAACCAAATTTGTCAGTAGAAGTTGATAAAAGAATAACTAAGAAGGATACAGAAGATCTCAATAATTTTTTTACCATAAAATATTTTACGAAACAAGAGCTAATGGATAAAATGGAATTGCGTAGAGAATCTATAAAATACAAATCGGCTGAGTATAAATGTGAACTTTGCTATTCCTGGTTTCTTGATATACGTGGACAAGAAAAACATGCAGGGCAACATGATCAGATCCGTGGCGAGTTTTATTGCGAAGATTGTCACATGTACTTCAGGACTAAGGAACAATTACAAACACATACTAAATCGCATCCAAGATGGTTTTTGTGCAAGTTGTGTCCGCAGTCTTATTCCAACTTGTATCGGGCGAAACTACACCTCTTATACCATCAAGGTCACCAATACACTTGCGAACAATGTAAAGCAGTTTTCACAAACCGAATTATTTACTTAAGACACATCCGAAATCATCACCCAATTGACTTCACATGCTGTTTCTGCGGAATCTCGCGCACATCCCAGATAGCACTCAACGCCCATAAGGCGCGTGATCATGAAGGCCTTCAAGAAGACGATGAGGTGATGAATATAACGGCGGTGCACTGCGAGACGTGTGATATAACGTTTACAAATGGGAAGGCGTACAATGTCCACTTGACCACAACTATGAAGCACACTGGCAAGTATAGATACAGCTGCGACACTTGTGATGAGAGATTTTCGACTAAAAAGGAGAGATTCATGCATTCATTGAAAGTTCACAAACGGCGTCCGCGACGCATTGAAAAACCGATTATTATGATAAAAGCATCCTCGGATAAATCCCAGGCTAAGCCGAATATGCCTCGGGTTAAAATAACATTACCCACGAAGCGTCCGCTCAATTCACTTCAAAAAATTAATTGGCCAGTGAAATGTCATTACTGTCCCGATGCATTAGTGTACAGCGAGCAGGAAAATTGGTTACACCACCGTCGTCAGCATCCAGAGAAGACATATATGACCATTAGGAGAAGATTTATTTGCGAGCATTGTGGGAAGGGATATAAAACCCGACACATACTCAATTACCACATGAACCTACACAATGGTGTAACCCCATTCAAGTGTGACGTTTGCAGTAAAGCGTTTTACTCGCGGACGCTTCTTAGAAATCATTTTGTGGTTGTACACTCCGATGAAAGACCATTCGTTTGCGACACATGTGGCTTGGCTCTTAAGACAAAAGGCACGCTGCATAAACATAACCGGATCCATTCGGGCGAAAAACCCTTCAAATGTGATGTTTGCGACAAAGCGTTTGCATTCAAAACATCACGCAGGCTTCATTATGAAGGGGTTCATTTAAATATTAAGAGAAAGAAGAAGAAGAAGTCGAAGAGAAAAGAGAGAGAAAAAGATGAAGTGAAGGAGAAAAGAGAGATAATCCTGAACACTTCTTCTAAGTCTTCTTCGGTCGTCAAATGA
- Protein Sequence
- MESLKCCRICLEVDGFMHNLSSNTLAFYYLTLTGINPLPKLKIPMYVCYECTALLKKYFVFRQKCLRGQAVLQALLSNNGEVTEENLKDIGRESFGLTSSLKIVENVSFNYDPQADLRKTYDLPNIIKEEDIVKLEHDYFCEVQDDSSDPIDVNNSEDNDLIEILEDDLDADHLDEKMEQQSFEQIMLQEPEPNLSVEVDKRITKKDTEDLNNFFTIKYFTKQELMDKMELRRESIKYKSAEYKCELCYSWFLDIRGQEKHAGQHDQIRGEFYCEDCHMYFRTKEQLQTHTKSHPRWFLCKLCPQSYSNLYRAKLHLLYHQGHQYTCEQCKAVFTNRIIYLRHIRNHHPIDFTCCFCGISRTSQIALNAHKARDHEGLQEDDEVMNITAVHCETCDITFTNGKAYNVHLTTTMKHTGKYRYSCDTCDERFSTKKERFMHSLKVHKRRPRRIEKPIIMIKASSDKSQAKPNMPRVKITLPTKRPLNSLQKINWPVKCHYCPDALVYSEQENWLHHRRQHPEKTYMTIRRRFICEHCGKGYKTRHILNYHMNLHNGVTPFKCDVCSKAFYSRTLLRNHFVVVHSDERPFVCDTCGLALKTKGTLHKHNRIHSGEKPFKCDVCDKAFAFKTSRRLHYEGVHLNIKRKKKKKSKRKEREKDEVKEKREIILNTSSKSSSVVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204391;
- 90% Identity
- iTF_01205256; iTF_01206062;
- 80% Identity
- -