Basic Information

Insect: Pieris brassicae
Gene Symbol: -
Assembly: GCA_905147105.1
Location: LR989941.1:5581973-5598552[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.032 2.6 8.9 0.3 1 23 339 361 339 361 0.98

2 11 0.0053 0.44 11.4 8.4 1 23 368 390 368 391 0.94

3 11 0.13 11 7.0 1.9 1 23 395 417 395 417 0.97

4 11 0.044 3.7 8.5 1.8 1 23 422 445 422 445 0.97

5 11 0.03 2.5 9.0 0.2 1 23 449 472 449 472 0.93

6 11 0.017 1.4 9.8 0.1 3 21 486 504 485 509 0.93

7 11 0.28 23 6.0 0.4 2 23 551 573 550 573 0.95

8 11 0.0067 0.55 11.1 0.7 2 20 589 607 588 610 0.91

9 11 2.7e-05 0.0023 18.6 0.2 1 23 616 638 616 638 0.97

10 11 5.5e-05 0.0046 17.6 5.6 1 23 645 667 645 667 0.98

11 11 2.5e-05 0.0021 18.7 4.0 1 23 673 696 673 696 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.032	2.6	8.9	0.3	1	23	339	361	339	361	0.98
2	11	0.0053	0.44	11.4	8.4	1	23	368	390	368	391	0.94
3	11	0.13	11	7.0	1.9	1	23	395	417	395	417	0.97
4	11	0.044	3.7	8.5	1.8	1	23	422	445	422	445	0.97
5	11	0.03	2.5	9.0	0.2	1	23	449	472	449	472	0.93
6	11	0.017	1.4	9.8	0.1	3	21	486	504	485	509	0.93
7	11	0.28	23	6.0	0.4	2	23	551	573	550	573	0.95
8	11	0.0067	0.55	11.1	0.7	2	20	589	607	588	610	0.91
9	11	2.7e-05	0.0023	18.6	0.2	1	23	616	638	616	638	0.97
10	11	5.5e-05	0.0046	17.6	5.6	1	23	645	667	645	667	0.98
11	11	2.5e-05	0.0021	18.7	4.0	1	23	673	696	673	696	0.95

Sequence Information

Coding Sequence: ATGAGGTGCTGTGTAAAATCCTGCAAAAATGATTCGAGAACTATATCCAAATCACACGGCGTTACATTTCATGTGTTTCCAACTGAATCAAAACTGCGCCAAGCCTGGTTAAAGGCAATAGGGAAGGAATCATGGTCTCCAAGAGAACGTAGTGCTGTCTGTTCAGACCACTTTATGATTGAAGATATTTTTGTCACCAAGAGTGGATTAAGGAAAGTGAGGAATGGTGCAGTTCCAATTTCTGATAGTAGTGTTTGCAGTTACAATGAAAATACTGTTAATATTTTGGTGTGTAGAATATGTCTTGGTTCAGATGTGAAGTTATTGCCTATTGGAAAGTTTAGTTTGGAACAAACATATGAACATGTAACAGGACATGCTATGTCAAAAGGAGATAATTTACCTCAATACATTTGTTTTGAATGTGCGCAGAGACTGACAAACTGTCATATGTTTAAAATGAAGTGCTTGAAATCTAGAAGGCTTCTATTAGATTTGATAGCAGATGATAGTAACATTAGTATAGATAGTATTAAATCAATAGACAGACAGACACATAAACTAACATCAGACCTATCTATAACAATATTGGATCCAGATAAAATAGTGAATCTAGAATATGTCGAAAATATAAATAAGATTGAAATTGAAAACATACCGGAGCAAGATAAAAACGATATATTTGTGCAAGAGTTACCGAAAGACTTCGACGATGATTTTAATGATAGAGACGACTTTAATGATGTGGATAATGTTAATGATAAAGATTATGATAAGGATTGCGACAAGGATTACTCCTCAGATGATAGTCTACCTCTTGAGTTGCAAAGAAAGAAGCGTAAAAAGACGAAAAAGATGAAAAAAGTCGACGAACCAAAGATCGATAGACGACGGAAGCCATTTTTGAATGCCGATTTAAATGAGACGTTATTCACGATCACGGACCTGACCGTGGAGGAGCAGGTCGCCGAGATTGAGAAGAGGCAGGAATCGGCGAATTATAAAAATGCTGTATTCAAATGTGGGGAGTGTTTCAAGGGGTTTTTGGACGAGGACGCTTATAATGGACATATGACACGACACACTAATCAATGCGGCGAACACGAATGCGCAATATGTAAGACACATTTTAAACATCCACACGCGCTGCGCAAGCACATAACGGCGCATCATACACAGAGATATAACTGTAATAGGTGTCCGTATGTCACTACGCATAGGCAGACTGCTCGGCTCCACGAGCGTTGGCATAAAGGGACGAAATACCAGTGTCCGCATTGTCAAGATGAATTTGTTAAATTCACAACATATATGGGACATATACGTATAAAGCATCCATCTGACTTCATATGTGTTCTCTGTGGTTATTCCTTCGTCAGTGAGAAAGGCATAGAACTGCATAAGAAGTTAAAACATCGATTGGATGATGGAAAGATGCCTGACGATGGGCCACTTTGTGAGTTATGCAACGTTCGTTTTGTGTCCGCGGAGGCGTATAAAAGACATTTAAGTGTGTCCGCCAGACATACCAACGATTCAAAAGACAAATCCAGGAAAGGAAGGAAAACACGCGAGAAAATGGATAAAAACGATATTTTTGATAGGAAGAAAAATTATCCGAGCCAATTGAGAAAAGCTGAAGGTCCAATACCTTGTGAACAGTGTGGCGTTGAATTGGAGGACTCCCGCGCGTACCACAGTCACTTCCGACGACAGCATCCAGACAAGAATCGAACCAACTACCCGTCAATGAAGTCGCCGTGTATGTGCGAGGTCTGCGGAAGAATGTTTCAGAGCTACGCCCTCCTTAAAGATCACCGCTGGGTGCATACTGGCGAGCGTCCCTTCGCGTGTTCAATATGCGGCAAATCGTTCCGTATGAAGCAACGTCTAGTAGCACATGGGCGTGTGCACAGTGAACTGAGGGCGTCCTACACGTGTGCCATGTGCGGGAAAAGCTTCTCCACCCATAGTAATTGTCAGCGGCATATGTTTATTCACACCGGCCTCCGTCCATACAAATGCGAGATGTGCGGCAAATGTTTCAAACACGCGAGCGAGAAGCGAGCTCACATAACATATGTGCATCTCAAGAAACCCTGGCCCAAACGGAGCCGAGGGAAACGGACCGGAAAGGGTCCCCTAGATTCAGGGGGCATGGCAGGTGAAATGGAGTCCCAGGTGTGGCCGACCCCGTGTGACCCCAAAATTCTCGACGTCAACCCTCTGATAGATAAGTCTATGTATTATAATCTTAAAATGTAA
Protein Sequence: MRCCVKSCKNDSRTISKSHGVTFHVFPTESKLRQAWLKAIGKESWSPRERSAVCSDHFMIEDIFVTKSGLRKVRNGAVPISDSSVCSYNENTVNILVCRICLGSDVKLLPIGKFSLEQTYEHVTGHAMSKGDNLPQYICFECAQRLTNCHMFKMKCLKSRRLLLDLIADDSNISIDSIKSIDRQTHKLTSDLSITILDPDKIVNLEYVENINKIEIENIPEQDKNDIFVQELPKDFDDDFNDRDDFNDVDNVNDKDYDKDCDKDYSSDDSLPLELQRKKRKKTKKMKKVDEPKIDRRRKPFLNADLNETLFTITDLTVEEQVAEIEKRQESANYKNAVFKCGECFKGFLDEDAYNGHMTRHTNQCGEHECAICKTHFKHPHALRKHITAHHTQRYNCNRCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFICVLCGYSFVSEKGIELHKKLKHRLDDGKMPDDGPLCELCNVRFVSAEAYKRHLSVSARHTNDSKDKSRKGRKTREKMDKNDIFDRKKNYPSQLRKAEGPIPCEQCGVELEDSRAYHSHFRRQHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHRWVHTGERPFACSICGKSFRMKQRLVAHGRVHSELRASYTCAMCGKSFSTHSNCQRHMFIHTGLRPYKCEMCGKCFKHASEKRAHITYVHLKKPWPKRSRGKRTGKGPLDSGGMAGEMESQVWPTPCDPKILDVNPLIDKSMYYNLKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01206897;
90% Identity: iTF_01205764;
80% Identity: iTF_01202525;