Basic Information

Insect: Pieris brassicae
Gene Symbol: Znf827
Assembly: GCA_905147105.1
Location: LR989946.1:4250323-4253448[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.043 3.6 8.5 0.5 1 23 83 105 83 105 0.93

2 9 0.025 2.1 9.3 2.2 2 23 134 156 133 157 0.92

3 9 6.5e-05 0.0053 17.4 2.2 3 23 181 201 179 201 0.96

4 9 0.00034 0.028 15.1 0.1 1 23 204 226 204 226 0.97

5 9 0.0002 0.016 15.9 2.5 1 23 231 254 231 254 0.97

6 9 0.6 50 4.9 4.1 2 23 264 286 264 286 0.95

7 9 0.00056 0.046 14.5 3.0 1 23 292 314 292 315 0.93

8 9 8.4e-08 6.9e-06 26.5 2.0 2 23 320 341 319 341 0.97

9 9 7.5e-05 0.0062 17.2 3.0 1 23 347 369 347 369 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.043	3.6	8.5	0.5	1	23	83	105	83	105	0.93
2	9	0.025	2.1	9.3	2.2	2	23	134	156	133	157	0.92
3	9	6.5e-05	0.0053	17.4	2.2	3	23	181	201	179	201	0.96
4	9	0.00034	0.028	15.1	0.1	1	23	204	226	204	226	0.97
5	9	0.0002	0.016	15.9	2.5	1	23	231	254	231	254	0.97
6	9	0.6	50	4.9	4.1	2	23	264	286	264	286	0.95
7	9	0.00056	0.046	14.5	3.0	1	23	292	314	292	315	0.93
8	9	8.4e-08	6.9e-06	26.5	2.0	2	23	320	341	319	341	0.97
9	9	7.5e-05	0.0062	17.2	3.0	1	23	347	369	347	369	0.98

Sequence Information

Coding Sequence: ATGATAAATTCGCTGTCAGATTTGAAAATATCGCCACGCCTTGGAGTGGGTAGAGAACACAGATCTCCACTTGCTGCCGTCTTCTGCCTCTCTCGCTTCATTACTTTCAGCTCACCAGCTCTGCCGGAATCCGAAGGACCAAAACCTAGTACAAGCGACGCTGACACACAATTAATAGAAAGATTAAACGCCGCAACAATAATAGAGAACACCACAGTCAAACCATTTATATACCTCCAAGCAAATTTCAAATGCTTCTACTGCAGTGAAGTTTTCCCGGAAGTGTCATCAGTGTTGCTACATTCAAACTACCACACGCTTCCGGATCGGCCATCTTTGTTAAAAAACGATTATCTCAAACAGGGCAAACGCGTTATTAGAGTCGATATATCGGATTTGAAATGCCGTTTATGCGAGCAGAAGTTCAATCAATTGGAAGACGTAAGACATCATTTGGAAGCAGAACACCACAAAGAGTTTCAGGCAGCTGGTGACGGGCTAATGGCGTACGATTTGACGGCAAATAACGGCTTGATCGCCTGTTACAAATGCAAGGAAACATTCACGTCTTTCCACCTTCTGAATCGACACATGAACGCGCATTCCAGCTTTGTATGCGAAACGTGTGGCGTGGGATTTGTGTCGCAACGCAGATTAATCAACCACACAATTGTACATCAAAACGGCACCCACAAATGTAAGCAATGCGACGAAGTGTTCCCAACCAAACTGAAACTTAGGTATCACGTTATAACCAAGCATAATAAGACAGATAAACGCATCAGACGGAAGTGTCCGCACTGTTTGGAACGCTTCACAGAACACTACCGGAAAATGACGCATTTGAGGGAGGTGCACGGGATAACGTTTTCGTTCGACTGCCGGTTTTGTAACGAAGTTTTCCCAACGCGTAAAGCGTTGACGAAGCACACCACACAGCACCATACGCAGAAAATCCAGTGCACGATTTGCGGCAAATGTTTCGGCACTAACACGCTGCTGAAGCGGCACATGCGCGGACATATTGGCGAGAGGAATTTCGTGTGTGACATCTGTCAGAAAGCGTACATGCACGAAAAGTCGCTTCGGCAGCATATGCACGTACATGGGCCGTTATATTAG
Protein Sequence: MINSLSDLKISPRLGVGREHRSPLAAVFCLSRFITFSSPALPESEGPKPSTSDADTQLIERLNAATIIENTTVKPFIYLQANFKCFYCSEVFPEVSSVLLHSNYHTLPDRPSLLKNDYLKQGKRVIRVDISDLKCRLCEQKFNQLEDVRHHLEAEHHKEFQAAGDGLMAYDLTANNGLIACYKCKETFTSFHLLNRHMNAHSSFVCETCGVGFVSQRRLINHTIVHQNGTHKCKQCDEVFPTKLKLRYHVITKHNKTDKRIRRKCPHCLERFTEHYRKMTHLREVHGITFSFDCRFCNEVFPTRKALTKHTTQHHTQKIQCTICGKCFGTNTLLKRHMRGHIGERNFVCDICQKAYMHEKSLRQHMHVHGPLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00430948;
90% Identity: iTF_01206023;
80% Identity: -