Basic Information

Insect: Pieris brassicae
Gene Symbol: -
Assembly: GCA_905147105.1
Location: LR989938.1:252405-262410[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9.1 7.5e+02 1.2 2.8 2 23 275 296 274 297 0.82

2 8 9.8e-05 0.0081 16.8 4.8 1 23 386 409 385 409 0.93

3 8 0.0008 0.066 14.0 1.2 1 23 557 579 557 579 0.98

4 8 3.3e-06 0.00027 21.5 1.7 1 23 584 606 584 606 0.97

5 8 3.5e-05 0.0029 18.3 1.0 2 23 613 635 612 635 0.93

6 8 2.1e-05 0.0017 18.9 2.1 1 23 641 663 641 663 0.99

7 8 7.6e-06 0.00063 20.3 1.7 1 23 669 691 669 691 0.99

8 8 4e-07 3.3e-05 24.4 3.7 1 23 697 720 697 720 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9.1	7.5e+02	1.2	2.8	2	23	275	296	274	297	0.82
2	8	9.8e-05	0.0081	16.8	4.8	1	23	386	409	385	409	0.93
3	8	0.0008	0.066	14.0	1.2	1	23	557	579	557	579	0.98
4	8	3.3e-06	0.00027	21.5	1.7	1	23	584	606	584	606	0.97
5	8	3.5e-05	0.0029	18.3	1.0	2	23	613	635	612	635	0.93
6	8	2.1e-05	0.0017	18.9	2.1	1	23	641	663	641	663	0.99
7	8	7.6e-06	0.00063	20.3	1.7	1	23	669	691	669	691	0.99
8	8	4e-07	3.3e-05	24.4	3.7	1	23	697	720	697	720	0.98

Sequence Information

Coding Sequence: ATGAGAACTGTAGAATCGCATTTATTGGGTGATAAAATAGATGAGGCTGTAACCCATTATATAAATACACACCAGTCGGCCGAGACAGTCCATGTAGATCCCAATTTATCATTAAACATTCAAGATGATGGAGGTGGTAGAGTGGTTACTGTTATGCACCCACAAGGCTACCAACAGCAGGTTTGCAGACAGATATCGGTGGGTGAACAGATTGGAGATGGACCTTGGGCTGAAGAATTATGGGATGGCAGGCTTGCTGCACTTGTGGCACATTTGGCCCAACCTAGTCGTACTTCTCATCACCAGGGACAAAACCCTCATCATAAGCCATCAACAGTAGTACGAAATGATATGGACGCATCTGTAATTCTGGATGGTTCTATGAGGCTTTTTAATGGACAGTCTTTGGAGCACCATCAGGAGCAGTTATCGGTACAAGTGTCAGACCTACCTCTACCTCCACTTCAGGATATGAAAAGGTGCCCCGACACCGGTTGGTTTAATAAAAAGAATACAGTAAAGGGCGATAGTGAAATTTTAGAAGACAGTCGGATGCTGGAAATGGCTTGCGGTTCACCGGCACAAAGTAAGCAGAACAAGAAGAGCTTGCCACATAAAAAACGGATCTCTAGGAAGTTAAAGAGGAACACTGGCAATACGACACCGAGTCAGCAGGACATCGTAGTGATCCAATGCAGTGAGGAGGTTCAGCCGGAGCAGGAGGAGATTCTACCCGATAGCTTCGTGGATTCTTTGCCTCGACACCATGACGAAGACCAGTTGCCAGTGCACACGCATGTGCCTCAGATCCGTGCAGTGTTAGTCTGCCAGCTTTGCGGTCAATTCTTTGGGGAAGAGCAGCTGAAGTTCTACCATCACCTGCGGCATCACTACGAACCGCCCGCCGCTCTCAGTATTGACAACCCTGTGCCTGACATTGCAATTGATAAGATTACAAACACCTGTATAGTAGACAACGGAGCGACGCTCCCCGATTCTATAGTAGAATTGTCGCTGGAAAATACGGTGCCAAAGACAATGTATCAGCCCATAGACAAGCACATTCTCTACGAAAAGCCTGTCTATAAATACTCTATGGTCATGGAGAAATCTGTGGAATGTGAATTAGACGATTCTTTGGACAAACTAGAGTTCTATTGTTGTGTTAAGTGCAATAAATCGTTTAGGAAGCAAAAGCAATTTGAGGCCCATCTACGAGAGATGCATACTTTGACTAAGTTAGAAGACATGGGCGAGTTCAGTGAGCCCGAAGACCTTATGGAAGGAATTCACGTGGCGGTGGACGAAGACCACGAGCAGGAGCCGGAGCCTGCCAACGGGCAGACGCCCGAGCAGGATGCCCCCGACCAGTACGACGCGGTGTTGCCACATTTAACCGTCGACAACGGCCACGTGCATCAGGAGCACATTCGGCATTGGTATTCACGTAGCGGCGGTGAGAGCCCCGAAGTAGGGTCGATATGCGCGTGCGGCGGCACCGGCTGCTGCCCCATGTGTGCGCCGCCTTATACTCAGCAGAGGCATCAGGTCGTGACGAGAGAACTACAAAGTCTGCTGGAGACGAACATACCGGCGAATCCCACTCCAGAAAATCACAAGGAAAATGAAAAGTCTCCTAAAAAGGGCAAAAAGAAATCCAACAGGAAGTTCGAGTGCGTCCAGTGTGGACGGGTGTTCGAACACCGGAATAGCATGCTCTACCATCTTCTCATGCACCAGGGCAAGAAGCACCCATGCCCCGTTTGTGGGAAACGGTTTTTCACCACTGGCTCGCTCAAGGTTCACAAACGAACTCACGACGGCGTTAAGCCCTGGAAGTGCGAAGAGTGCGGACAACGCTTCCGACGATCAGGAGACCTGAAGTACCACAAGGACTCCAAACATTCCACCGAGAAACGATTCAAATGCGAATTCTGCGTGAAGGAGTTCTCCCGGCGATACTCGTTGAGCGTCCACCGGCGTATCCACACGGGCGAACGGAACTACCCTTGTGACATTTGCCACAAGAGCTTCCGCGCCGCCTCGTACAAGCAGATTCATATGCGGACGCACACGGGTGTGAAGCCTTACCAATGCGAGCATTGCAACAAATGCTTTCGCGTACCGTACGACCTGCGCCGGCACGTCCGAGTCGTACACGAAAAGATCAAAAAGGAAGACGATCCCAAAAAGAAGGATAAGAATAAAAAAGAAGAAAAACCAAAGACAAAGGAGACCAAGAAGAAGACGGTCAAACCGCCCAACGTCACGATTCAGAAATCCGGGAAGTTAACGGAGCTCGGCTCGAGTCAGTGTAAGGACTTTTACTACGCGGACCAGGATATTAAGCAGGAGATGAAGTTTAGGAACGAAATCGGTGACGAATTTCGGGATAACACCGATGGGAAAATGCCCATTTTCTCCAATGTCGAGAAGTCGGGTGTGGTTTTGAACGACCTGAGGAGTCTGGACACGAGTCGAAGAGACGTGAACGGCGATATTGAAATGTTCGACAAACTTGCCCTCTACAGCATGCCAGCCGTTTGA
Protein Sequence: MRTVESHLLGDKIDEAVTHYINTHQSAETVHVDPNLSLNIQDDGGGRVVTVMHPQGYQQQVCRQISVGEQIGDGPWAEELWDGRLAALVAHLAQPSRTSHHQGQNPHHKPSTVVRNDMDASVILDGSMRLFNGQSLEHHQEQLSVQVSDLPLPPLQDMKRCPDTGWFNKKNTVKGDSEILEDSRMLEMACGSPAQSKQNKKSLPHKKRISRKLKRNTGNTTPSQQDIVVIQCSEEVQPEQEEILPDSFVDSLPRHHDEDQLPVHTHVPQIRAVLVCQLCGQFFGEEQLKFYHHLRHHYEPPAALSIDNPVPDIAIDKITNTCIVDNGATLPDSIVELSLENTVPKTMYQPIDKHILYEKPVYKYSMVMEKSVECELDDSLDKLEFYCCVKCNKSFRKQKQFEAHLREMHTLTKLEDMGEFSEPEDLMEGIHVAVDEDHEQEPEPANGQTPEQDAPDQYDAVLPHLTVDNGHVHQEHIRHWYSRSGGESPEVGSICACGGTGCCPMCAPPYTQQRHQVVTRELQSLLETNIPANPTPENHKENEKSPKKGKKKSNRKFECVQCGRVFEHRNSMLYHLLMHQGKKHPCPVCGKRFFTTGSLKVHKRTHDGVKPWKCEECGQRFRRSGDLKYHKDSKHSTEKRFKCEFCVKEFSRRYSLSVHRRIHTGERNYPCDICHKSFRAASYKQIHMRTHTGVKPYQCEHCNKCFRVPYDLRRHVRVVHEKIKKEDDPKKKDKNKKEEKPKTKETKKKTVKPPNVTIQKSGKLTELGSSQCKDFYYADQDIKQEMKFRNEIGDEFRDNTDGKMPIFSNVEKSGVVLNDLRSLDTSRRDVNGDIEMFDKLALYSMPAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01203546; iTF_01206010; iTF_01204351; iTF_01206851; iTF_00879150;
90% Identity: iTF_01206851;
80% Identity: -