Pbra009669.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- -
- Assembly
- GCA_905147105.1
- Location
- LR989942.1:14411918-14417430[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.8e-05 0.0031 18.1 0.9 1 21 43 63 43 64 0.94 2 12 0.00071 0.059 14.1 2.7 2 23 78 100 77 100 0.92 3 12 0.00024 0.02 15.6 1.4 1 21 135 155 135 156 0.96 4 12 7.5e-06 0.00062 20.4 0.4 1 23 167 190 167 190 0.97 5 12 0.0036 0.29 11.9 2.4 1 23 196 219 196 219 0.96 6 12 1.9e-05 0.0016 19.1 1.2 1 23 226 248 226 248 0.98 7 12 0.0072 0.59 11.0 0.2 1 23 253 275 253 275 0.97 8 12 1e-05 0.00083 20.0 1.0 1 23 281 303 281 303 0.98 9 12 0.00059 0.049 14.4 0.4 1 23 306 328 306 328 0.90 10 12 2.2 1.8e+02 3.1 0.5 2 23 334 358 333 358 0.91 11 12 0.00014 0.012 16.3 0.2 1 20 362 381 362 384 0.92 12 12 1.2 99 4.0 2.2 3 23 392 414 391 415 0.82
Sequence Information
- Coding Sequence
- ATGCCTCCTAAACGCAAAAGAGGACGGCCACGTCATAAATTATCTCAGCCATTAAACTCAAGGAAAAATTTAGTTTTTGAGAAAGACATCGAAGTGTCAGAAAATCTGAGCAAAGAAGTTATGGAATATATTTGCTCCTATTGTAAGAAATCCTTTAAGAAGAGGCAATATTTGATTGCGCATGTCAATAGCTGTGGGAATGATACTTTACACGAAGAGAAGCCTAAATTACACTGTCCCAAATGCACTAAAGTATTTGTTTTTAAGAAGAGCTATAAAAAACATGTTGAAAATGAGCATTATGAAGGTCCTGATGGGGTTTGCTGTGAACACTGCTCTGTCATTTGCCCAAATAAAGAAATTTTACAAGATCATTTAGACAAGAAACATAACTCAGGCACATATTCATGTCAGTTCTGTACTCAGACTTTTGTACGAAGAGCACATGTAACTCGTCACATGTTGCAAAAAGGTTGTGATGGCCGAAAGCTTCGGGAATTTTCTTGCGGTATATGTTCTGCAAAATTTTCAAGGAAAGATAATCTTTTGGTACACCTTCGGCTACAACATATCATGAACAAAAGATTTCAGTGCAAGATGTGTGATTTTTCTACAAAGAATTTCTCAAAACTAATTCTTCACTCACAAAGAATGCATTTACCTAAGCCTTTACAATATGAATGTGATCACTGTGGGAAGTTAACAAAGTCTAGAGGCTCTTTGACAAAGCATCTTGAGATTCATGGTGATAAGAAATATGCTTGTGAAGTGTGTGGCTACAGCACATACACGATTGAGGTGATGCGCCGACATACGTTGACACACGTCGAGGATAAACCCTACAAGTGCAGTATCTGTTCCAACTCGTTTATACAGAAAGCCCAGCTTTTGAGGCACCTTAATCAACATATGGAATTTGTTTGCAATATTTGCTCAAAACGCTTCAAGACCAGGGAAGAGGCGACAATTCACGAGGGACAGCATGATCCAAATGATCTTTCATGCCCGTTCGAAGACTGCACTGAAAAAAAATTTGAAGATGAAGAACATCAATCCATTCATATAAAAGAACACCTCCAAGCGTTCAAGTGCGAGGTGTGCGGCAAACCCTTTGAGAAGGAAATCAACATGCGTCGCCACGTGCCGACGCACGCTCTGGACCGTCCCCGTCGCTGCATGTACTGCGTGAACGCGAGGGCGTACGTCAGGGGTGAGCATTTACTTCGACACGTGAGGAAGCACCACGCGGACGTCTTCATGCAGCGCTTGATGCATGTACGGAGTGTGCTCGGGTCTTACGTCACTACGCCTCGTGTGACCACGCCCCGCGTGTCGAAGTCCGAGCTGGATGCGATCCTGAACATGTTAGATGCTGAGTCTGACCGCATCATCGAGGACTACGGCACTGGGGTACTGTACGGAGGGCTGCAGGATATAAACGATCAAATGGAGATTGAAATACCGAAGAATGAACCAAACACACTGCTGAGTGAAGAGGAATTAGTTGAAAATCTCAAAGAGCTGCTGTCCAAACTTATTGATCAAGAGTTGCTCGAGGCATTCGGTTGGCCAGATAAGCCTATTGAAGATATATTAGAGAAGGTGATAGAAAACTGTGGGGCACGCCCGGCCGATCGCGAAAAGTGGTCTCGAGTTCAGTGCCTGCGGGAAAACACGAAGCATCTGTTTATCTACGTGGTTGAAGACAAGAATATTGCTAAAATGCTCGGCACACACACCATCGATCAGGTTATTATGCACATACTGCAGCAAGTCAGTGACAATGTGTGA
- Protein Sequence
- MPPKRKRGRPRHKLSQPLNSRKNLVFEKDIEVSENLSKEVMEYICSYCKKSFKKRQYLIAHVNSCGNDTLHEEKPKLHCPKCTKVFVFKKSYKKHVENEHYEGPDGVCCEHCSVICPNKEILQDHLDKKHNSGTYSCQFCTQTFVRRAHVTRHMLQKGCDGRKLREFSCGICSAKFSRKDNLLVHLRLQHIMNKRFQCKMCDFSTKNFSKLILHSQRMHLPKPLQYECDHCGKLTKSRGSLTKHLEIHGDKKYACEVCGYSTYTIEVMRRHTLTHVEDKPYKCSICSNSFIQKAQLLRHLNQHMEFVCNICSKRFKTREEATIHEGQHDPNDLSCPFEDCTEKKFEDEEHQSIHIKEHLQAFKCEVCGKPFEKEINMRRHVPTHALDRPRRCMYCVNARAYVRGEHLLRHVRKHHADVFMQRLMHVRSVLGSYVTTPRVTTPRVSKSELDAILNMLDAESDRIIEDYGTGVLYGGLQDINDQMEIEIPKNEPNTLLSEEELVENLKELLSKLIDQELLEAFGWPDKPIEDILEKVIENCGARPADREKWSRVQCLRENTKHLFIYVVEDKNIAKMLGTHTIDQVIMHILQQVSDNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00879067;
- 90% Identity
- iTF_01203461;
- 80% Identity
- -