Basic Information

Insect: Pieris brassicae
Gene Symbol: -
Assembly: GCA_905147105.1
Location: LR989939.1:3643724-3660911[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.4 2e+02 3.0 0.3 6 20 8 22 2 24 0.84

2 14 1.4 1.1e+02 3.8 0.0 2 21 30 49 29 50 0.92

3 14 0.54 45 5.1 0.5 1 12 188 199 188 208 0.83

4 14 2.5 2e+02 3.0 0.1 1 17 325 341 325 342 0.87

5 14 4.8e-05 0.004 17.8 0.7 1 23 357 379 357 379 0.99

6 14 0.13 11 7.0 4.3 2 23 397 418 395 418 0.93

7 14 1.7 1.4e+02 3.5 0.3 1 9 440 448 440 461 0.80

8 14 6.1e-06 0.00051 20.6 0.6 2 23 468 489 467 489 0.97

9 14 0.0086 0.71 10.7 2.0 1 23 506 528 506 528 0.98

10 14 9.3e-07 7.7e-05 23.2 3.8 1 23 534 556 534 556 0.97

11 14 0.007 0.58 11.0 7.2 1 23 562 584 562 584 0.97

12 14 3.3e-06 0.00027 21.5 0.8 1 23 590 612 590 612 0.98

13 14 5.9e-05 0.0049 17.5 0.1 1 23 616 638 616 638 0.98

14 14 6.3e-05 0.0052 17.4 0.1 1 23 646 669 646 669 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.4	2e+02	3.0	0.3	6	20	8	22	2	24	0.84
2	14	1.4	1.1e+02	3.8	0.0	2	21	30	49	29	50	0.92
3	14	0.54	45	5.1	0.5	1	12	188	199	188	208	0.83
4	14	2.5	2e+02	3.0	0.1	1	17	325	341	325	342	0.87
5	14	4.8e-05	0.004	17.8	0.7	1	23	357	379	357	379	0.99
6	14	0.13	11	7.0	4.3	2	23	397	418	395	418	0.93
7	14	1.7	1.4e+02	3.5	0.3	1	9	440	448	440	461	0.80
8	14	6.1e-06	0.00051	20.6	0.6	2	23	468	489	467	489	0.97
9	14	0.0086	0.71	10.7	2.0	1	23	506	528	506	528	0.98
10	14	9.3e-07	7.7e-05	23.2	3.8	1	23	534	556	534	556	0.97
11	14	0.007	0.58	11.0	7.2	1	23	562	584	562	584	0.97
12	14	3.3e-06	0.00027	21.5	0.8	1	23	590	612	590	612	0.98
13	14	5.9e-05	0.0049	17.5	0.1	1	23	616	638	616	638	0.98
14	14	6.3e-05	0.0052	17.4	0.1	1	23	646	669	646	669	0.96

Sequence Information

Coding Sequence: ATGATCTCCTGTCCACTCTGTTGCAGTAGTGCATTCAAAACCAAGGCATTGCTCATTGATCATCTAACTCAAATTACCAATAATATACCTTGTCCGATATGCTCAGTCAATATAACATCAATTGATTGTCTTATTGACCATCTCAAGAGCAACAATTGTATAGGCGCAATAGTTTTTAACCTCCACCAGAACCAGTTTGTACAACAATCAGACTATAACTCGGAGTCAATAAGCAATGAAACTCAAAATTCTGATAATACTGAAGTAATAGAAACTAACATTGAAGATATTTCTGAAGTCAGCACATTGTATACAGAAATATTAAATAAAGAACATATACAGGAATTGAGGATTGTAAAAGAGTGTGGTGAGAAATATGTAATAATAGATGATAAAGGTTCAGTAATTAATACTGGACATACTTTTGTGTCAACACAAAATGAGGATGGTACTATATCATACAAAATTGAAGAAGCTGAACAACCTATAGAGGAAGATGCTGAGCTGGTAACAAAAGTGGAAGAAGAAAGTCAAGACAGTGTTGAGGAATCTGAAGAGATATACAGTTGTAACACTTGTTCAATGACATTCTCTTCTGTTCTTGATCATATAAAGCAGTATCATACAGACCAAAATGTAGTTGTTGAGGAACCAATTGACTCTAATGCCATACAGGAATATCAAAATTATAATGAAGATTCAGAAGACAACAGCCATTTCATATCGGAAGATATTGTTCAGGATATGACGCAAGAGAATCTGCCAGTAAATCAAAAAGTTGCCAAGCAAGTAAAACCCAAACAATCAAAAAACAAGAAATGCTTTGTCCGGTTGGAAATGGTTGATAAATCAAATATAAATGAAAATGATAAATTAAAAGAACAGAGAATGTTGATTGAAAAAGATAGCGATCCCACCTACCACAAGGTAGTTATAAAAACACTTCATACGGATGACAAGAAAAGTACAGTTTACAGTTGTATGTACTGCAATCTTGTGGTTTCTTCGCTGGCTGAATTCAAGCAACTACCTTGTACGCTCAGTACAGACACAAATGGACCTCCAAAATATACCTGTACAGTCTGCTCGATAGGCTACGATAATCCCAAATCTCTGTGTGCGCATATGAAAGTTCATAAGGAGAAACCATCGGCTGACTGTGTCTCAACCGCGCGGAGCACTAAATGCCACTGCGAGGTCTGCAACACCTGGTTTCCGACGACCAAGGCCCTCAAGCTGCACAGGCGAATGCATTATCCCATTAAACCTCGTCCTATTCAGTTACCGGTGGGATCAACAGGCCCTAATACAGAGACGTTTGTGTGTCCCATTTGCAAGAAGGAGATACCTGTTCACTATCGATTAATTCATCAAAACTCGCATAAATTGTCTGATGATTTGACCTGTGATATTTGTAATAAGAAATTCTCAACGCGGGAGCTGCTCGAGATGCACACGAATGTACATAATATGTATAAGATAAATACAAAAAAGCAAGAGAACGATGAACTTCGATACCAGTGCCTTTATTGTGTGAGGAAGTTTGCGAAACCGCACGAGAAGGTGAAACACGAGAGGATTCATACTGGTGAAAAACCTCATATTTGTGAAATTTGTGGAAAATCTTTTCGTGTTTCGTATTGTCTTACGTTGCATATGCGAACGCACACGGGCGCACGCCCATACGAGTGTCCTCATTGTCCTAAAAGATTCAAAGCGCATAGCGTATACCACCACCACATACTATCGCATTCGGACGTACGAGCGTATAAATGCCCGTTCTGTCCAAAGTCGTTCAAGACCTCAGTACAACTTGCCGGACACAAAAATTCTCACACAAAACCTTTTCAGTGCCAAATTTGTAATAGGCCATTCGCGTCCTTATACGCGGTACGGTTACACATGGAAGTACACTCGCGATTGAACAGCCTAAAATTCAAATGTACGGAGTGTGGTGCTAGTTACGCTCGGGCCTTCGCCCTTAAGGACCATGTTAAACAGGCACATTCCCACATAGAGGCCAGTGTTGATAATATGGTTGAACAGAAAGAGACTAAACTGATTTGGGATGGAAATATAGACGAAACTGAAGGAATTGAATCACAAGACACTGAAATAAGCGAATTAAATTCGACTGAACTTGTTATAAGTTAA
Protein Sequence: MISCPLCCSSAFKTKALLIDHLTQITNNIPCPICSVNITSIDCLIDHLKSNNCIGAIVFNLHQNQFVQQSDYNSESISNETQNSDNTEVIETNIEDISEVSTLYTEILNKEHIQELRIVKECGEKYVIIDDKGSVINTGHTFVSTQNEDGTISYKIEEAEQPIEEDAELVTKVEEESQDSVEESEEIYSCNTCSMTFSSVLDHIKQYHTDQNVVVEEPIDSNAIQEYQNYNEDSEDNSHFISEDIVQDMTQENLPVNQKVAKQVKPKQSKNKKCFVRLEMVDKSNINENDKLKEQRMLIEKDSDPTYHKVVIKTLHTDDKKSTVYSCMYCNLVVSSLAEFKQLPCTLSTDTNGPPKYTCTVCSIGYDNPKSLCAHMKVHKEKPSADCVSTARSTKCHCEVCNTWFPTTKALKLHRRMHYPIKPRPIQLPVGSTGPNTETFVCPICKKEIPVHYRLIHQNSHKLSDDLTCDICNKKFSTRELLEMHTNVHNMYKINTKKQENDELRYQCLYCVRKFAKPHEKVKHERIHTGEKPHICEICGKSFRVSYCLTLHMRTHTGARPYECPHCPKRFKAHSVYHHHILSHSDVRAYKCPFCPKSFKTSVQLAGHKNSHTKPFQCQICNRPFASLYAVRLHMEVHSRLNSLKFKCTECGASYARAFALKDHVKQAHSHIEASVDNMVEQKETKLIWDGNIDETEGIESQDTEISELNSTELVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01206870;
90% Identity: iTF_01206870;
80% Identity: -